Locus 7328

Sequence ID 3L_DroMel_CAF1
Location 19,645,192 – 19,645,301
Length 109
Max. P 0.517398
window11904

overview

Window 4

Location 19,645,192 – 19,645,301
Length 109
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 82.17
Mean single sequence MFE -24.93
Consensus MFE -17.00
Energy contribution -17.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.517398
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19645192 109 - 23771897
---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGAGACAGAGAGACAAACGGCGGGAAAAGUGGAAAAGUGCUUAGUGCCUUAGUUUAAAGCGAAU
---..(.((((((((.....)))))))))(((..((...))..))).((.((((...........(.((.......)).)..(((.((.....))))).))))...)).... ( -26.20)
>DroSec_CAF1 59874 94 - 1
---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGG---------------GACAAACGGCGGGAAAAGCGGAAAAGUGCUUAGUGCCUUAGUUUAAAGCGAAU
---....((((((((.....))))))))((((((((...(((..---------------....)))((((....(((((......)))))..))))...)))..)))))... ( -25.00)
>DroSim_CAF1 61887 109 - 1
---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGAGACAGAGAGACAAACGGCGGGAAAAGCGGAAAAGGGCUUAGUGCCUUAGUUUAAAGCGAAU
---..(.((((((((.....)))))))))(((..((...))..))).((.((((...........(.((.......)).)...(((((.....))))).))))...)).... ( -31.00)
>DroEre_CAF1 59850 93 - 1
---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCGGCGA--------GACAAACGGCGGGAA--------AAGUGCUUAGUGCCUUGGUUUAAAGCGGAU
---....((((((((.....))))))))((((..((...))..))))((.(--------(((....((((..((--------......))..))))...))))...)).... ( -27.30)
>DroWil_CAF1 88713 94 - 1
ACAAAGACACAUAACAGUUUGUUAUUUGCGCUUGACAAAGUUGGGCAACGAGAC--------AAA--ACGGUAA--------AAGUGCUUAGUGCCUUAGUUUAAAGCAAUU
.....(.((.(((((.....))))).)))((((...(((.(.(((((..(((..--------...--((.....--------..)).)))..))))).).))).)))).... ( -18.30)
>DroAna_CAF1 58191 93 - 1
---AAGACACAUAACACUUUGUUAUUUGCGCUUGACAAAGUUGGGCAGCGA--------GACAAACGGCGUUAA--------AAGUGCUUAGUGCCUUGGUUUAAAGCGAAU
---..(.((.(((((.....))))).)))(((..((...))..))).((.(--------(((....((((((((--------......))))))))...))))...)).... ( -21.80)
>consensus
___AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGA________GACAAACGGCGGGAA________AAGUGCUUAGUGCCUUAGUUUAAAGCGAAU
.....(.((((((((.....)))))))))(((..((...))..)))........................................((((...((....))...)))).... (-17.00 = -17.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:06 2006