| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,627,394 – 19,627,488 |
| Length | 94 |
| Max. P | 0.731802 |
| Location | 19,627,394 – 19,627,488 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19627394 94 + 23771897 ---------------GCGGACUGUUCGAACAUCAUCAGCGCCCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGGCAG- ---------------.(((..((((.((......)))))).))).(((..((((((((.(((((((.((((..........)))).))).))))))))))))..)))..- ( -23.20) >DroVir_CAF1 42960 92 + 1 U--G-----------C-AAGCCGCCUGCUCAUCUU--GAGUCCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGACA-- .--.-----------.-....((...((((.....--)))).)).(((..((((((((.(((((((.((((..........)))).))).))))))))))))..))).-- ( -23.20) >DroPse_CAF1 41726 109 + 1 UUGGACUGGCUGCCUGCCUGCAGUCGGAACAUCAUCAGCGUUCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGGCAG- .((..((((((((......))))))))..))..............(((..((((((((.(((((((.((((..........)))).))).))))))))))))..)))..- ( -32.50) >DroGri_CAF1 45788 94 + 1 U--G-----------C-CAGUCGCCAGCUCAUCUU--GAGUUCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGGCAGG (--(-----------(-(..(((..(((((.....--)))))))).....((((((((.(((((((.((((..........)))).))).))))))))))))..)))).. ( -28.60) >DroMoj_CAF1 45225 95 + 1 U--G-----------ACUGACUGAGCGCUCAUCUUC-GAUUUCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGACAG- .--.-----------.(((.(((((.((((......-......)))).))((((((((.(((((((.((((..........)))).))).))))))))))))))).)))- ( -24.30) >DroPer_CAF1 41767 109 + 1 UUGGACUGGCUGACUGCCUGCAGUCGGAACAUCAUCAGCGUUCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCGAGAUCAUUGCUCAUGUGUACAAUGAUGACAGGCAG- ((((((..((((((((....))))).((......)))))))))))(((..((((((((.(((((((.((((..(....)..)))).)))).)))))))))))..)))..- ( -32.60) >consensus U__G___________GCCAGCAGUCCGAACAUCAUC_GAGUUCGAGUUCUUCAUCAUUUGUAGCAUCAGCGUCAAGAUCAUUGCUCAUGUUUACAAUGAUGACAGGCAG_ .............................................(((..((((((((.(((((((.((((..........)))).)))).)))))))))))..)))... (-19.49 = -19.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:01 2006