Locus 7320

Sequence ID 3L_DroMel_CAF1
Location 19,616,659 – 19,616,772
Length 113
Max. P 0.947333
window11895

overview

Window 5

Location 19,616,659 – 19,616,772
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.10
Mean single sequence MFE -28.50
Consensus MFE -29.45
Energy contribution -28.78
Covariance contribution -0.67
Combinations/Pair 1.16
Mean z-score -0.89
Structure conservation index 1.03
SVM decision value 1.37
SVM RNA-class probability 0.947333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19616659 113 - 23771897
GUCGUCGAUGGGCG------UGCCGGGAUUAACGCAAUUGGACACAAAGGUGGGGAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUU-UCUCAGU
........((((..------((((..((((..(((..(((....)))..)))..)))).((((((........)))))).......(((((((...)))))))..))))...-.)))).. ( -27.50)
>DroGri_CAF1 30822 114 - 1
AUCGUCAAUGGGUG------UGCCGGGAUUAACGCAAUUGGACACAAAGGUGGGAAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUUUUCUCAGU
........((((..------((((..((((..(((..(((....)))..)))..)))).((((((........)))))).......(((((((...)))))))..)))).....)))).. ( -27.10)
>DroWil_CAF1 48660 119 - 1
GUCAUCGAUGGGCGUCAGCAUGCCGGGAUUAACGCAAUUGGACACAAAGGUGGGAAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUU-UCUCAGU
.(((((....(((((....)))))..((((..(((..(((....)))..)))..)))).((((((........)))))))))))..(((((((...))))))).........-....... ( -30.90)
>DroYak_CAF1 31487 113 - 1
GUCUUCGAUGGGCG------UGCCGGGAUUAACGCAAUUGGACACAAAGGUGGGGAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUU-CCUGAGU
((.((((((..(((------(..........)))).)))))).))......((((((((((((((........)))))).......(((((((...)))))))....)))))-))).... ( -30.50)
>DroMoj_CAF1 31896 113 - 1
AUCAUCAAUGGGCG------UGCCGGGAUUAACACAAUUGGACACAAAGGUGGGAAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUU-UCUCAGU
.(((((....((..------..))..((((..(((..(((....)))..)))..)))).((((((........)))))))))))..(((((((...))))))).........-....... ( -27.50)
>DroAna_CAF1 30593 113 - 1
GUCGUCAAUGGGCG------UGCCAGGAUUAACGCAAUUGGACACAAAGGUGGGGAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAGUGUUUCAUUUGUAAGGUAAUU-UCUCAGU
........((((..------((((..((((..(((..(((....)))..)))..)))).((((((........)))))).......(((((((...)))))))..))))...-.)))).. ( -27.50)
>consensus
GUCGUCAAUGGGCG______UGCCGGGAUUAACGCAAUUGGACACAAAGGUGGGAAUUAGUUCGGAUUUAAAACCGGACGAUGAAAACAAAUGUUUCAUUUGUAAGGUAAUU_UCUCAGU
.(((((....((((......))))..((((..(((..(((....)))..)))..)))).((((((........)))))))))))..(((((((...)))))))................. (-29.45 = -28.78 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:57 2006