Locus 7314

Sequence ID 3L_DroMel_CAF1
Location 19,594,950 – 19,595,046
Length 96
Max. P 0.534303
window11883

overview

Window 3

Location 19,594,950 – 19,595,046
Length 96
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.80
Mean single sequence MFE -25.67
Consensus MFE -19.55
Energy contribution -19.72
Covariance contribution 0.17
Combinations/Pair 1.16
Mean z-score -1.02
Structure conservation index 0.76
SVM decision value 0.00
SVM RNA-class probability 0.534303
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19594950 96 + 23771897
UGAACGGCAGGUCUGUAGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAGAAAAGAA------AAUAUG-----ACAUGGAUGAGUA
.....((((.(((......)))..))))..(....)...((((((((.(((((....)).)))(((.(.........------....).-----))).)))))))). ( -25.72)
>DroSec_CAF1 10089 93 + 1
UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAUAAAUGAA------AGUAU--------AUAGAUGAGUA
.........((((...((((....)))).....))))..(((((((..(((((....)).))).....(((.((...------.)).)--------)).))))))). ( -25.40)
>DroSim_CAF1 10241 93 + 1
UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAUAAAUGAA------AGUAU--------AUAGAUGAGUA
.........((((...((((....)))).....))))..(((((((..(((((....)).))).....(((.((...------.)).)--------)).))))))). ( -25.40)
>DroEre_CAF1 10002 97 + 1
UGAAUGGCAGGUCUGUGGCGGCGAUGCCUAGAUGACUGAACUCAUCUUGCAGGCAAGCCAUGCUGUGGAGAAAUCAA------GAUAUGU----ACAGGGAUUAAUA
...(((((..((((((((((....)))).((((((......)))))).))))))..))))).(((((.(........------....).)----))))......... ( -29.60)
>DroWil_CAF1 12560 96 + 1
UAAAUGGCAAAUCUGUUGUGGCAAGUCCCAGGUGUCCGAAUUCAUCUUGCAGGCAGGCCAUGCUUUAAAAG-AUUAAAUGGAAAAUA----------UUUAUUAAUA
...(((((....(((((...(((((.....((...))........))))).))))))))))..........-..((((((.....))----------))))...... ( -17.22)
>DroYak_CAF1 9851 101 + 1
UAAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCUUGCAGGCAAGCCAUGCUGUGGAGAAAUCAA------AAUAUGUUCAUACAUAGAUCAAUA
.........((((((((..(((..(((((((((((......))))))...))))).)))....((((((.(.((...------.)).).)))))))))))))).... ( -30.70)
>consensus
UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAGAAAUGAA______AAUAU________AUAGAUGAAUA
.....(((..((((((((.(((...)))..(((((......)))))))))))))..)))................................................ (-19.55 = -19.72 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006