Locus 7307

Sequence ID 3L_DroMel_CAF1
Location 19,561,969 – 19,562,075
Length 106
Max. P 0.612818
window11874

overview

Window 4

Location 19,561,969 – 19,562,075
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 76.23
Mean single sequence MFE -41.13
Consensus MFE -23.17
Energy contribution -21.75
Covariance contribution -1.41
Combinations/Pair 1.48
Mean z-score -1.58
Structure conservation index 0.56
SVM decision value 0.16
SVM RNA-class probability 0.612818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19561969 106 - 23771897
C---AGGAGCAGGGCAAAGAGCUGCGGCUACCGGAGUGAUUGCAAGGAAU---CUGGAAAGUCAGGCCUAAGGAUGAGGCGGAAGCGCCGGGCUUCCAUGCUCUUGAAGAGC
(---(((((((..((((...(((.(((...))).)))..))))..(((((---((((....((..((((.......)))).))....))))).)))).))))))))...... ( -41.70)
>DroPse_CAF1 5543 106 - 1
C---CGCAGUCGGGCCAAGAGCUGUGGCUAUCGCAGCGACUGCAAGGAGU---CGGGCAAGUCUGGGAUGCGGAUGCGACGCAAGCGAAGGGCCUCGAUGCUGCUGAAGAAU
.---.(((((((((((....(((...((..((((..(((((......)))---)).....(((((.....))))))))).)).)))....)))).))..)))))........ ( -39.30)
>DroGri_CAF1 6840 112 - 1
CCGCAUGAGUCGUGCCAAGAGCUGCGGCUAUCGCAGCGAUUGCAAGGAAUCGUCCGGAAAAUCGAGCAAAUCGAUGCGUCGACGCAGACGCGCCUCCAUGCUGAAGAGCAGC
(((.((((.((.(((.((..((((((.....))))))..)))))..)).)))).)))...(((((.....)))))(((((......))))).......((((....)))).. ( -40.40)
>DroSim_CAF1 5714 106 - 1
C---AGGAGCAGGGCAAAGAGCUGCGGCUACCGCAGUGAUUGCAAGGAAU---CUGGAAAGUCAGGCCUAAGGAUGAGACGGAAGCGCCGUGCUUCCAUGCUCUUGAAGAGC
(---(((((((..((((...(((((((...)))))))..)))).(((...---((((....)))).)))...........((((((.....)))))).))))))))...... ( -41.40)
>DroAna_CAF1 6281 106 - 1
C---CGGAGCAGGGCCAAGAGCUGUGGCUACCGCAGCGACUGCAAGGAGU---CGGGGAAGUCCGGCCUAAGAAUGCGACGGAAGCGGCGGGCUUCCAUGCUCCUGAAAACG
.---.(((((((((((....(((((((...)))))))((((......)))---)..((....)))))))...........((((((.....)))))).))))))........ ( -47.00)
>DroPer_CAF1 5561 106 - 1
C---CGCAGUCGGGCCAAGAGCUGUGGCUAUCGCAGCGACUGCAAAGAGU---CGGGCAAGUCUGGGAUGAGGAUGCGACGCAAGCGAAGGGCCUCGAUGCUGCUGAAGAAU
.---.(((((((((((....(((...((..((((..(((((......)))---)).....((((.......)))))))).)).)))....)))).))..)))))........ ( -37.00)
>consensus
C___AGGAGCAGGGCCAAGAGCUGCGGCUACCGCAGCGACUGCAAGGAAU___CGGGAAAGUCAGGCAUAAGGAUGCGACGGAAGCGACGGGCCUCCAUGCUCCUGAAGAGC
.....(((((.(((((....(((((((...)))))))...((((.........((((....)))).........))))............)))))....)))))........ (-23.17 = -21.75 +  -1.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:38 2006