Locus 7305

Sequence ID 3L_DroMel_CAF1
Location 19,559,852 – 19,559,955
Length 103
Max. P 0.516721
window11871

overview

Window 1

Location 19,559,852 – 19,559,955
Length 103
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 83.21
Mean single sequence MFE -30.60
Consensus MFE -19.57
Energy contribution -20.02
Covariance contribution 0.45
Combinations/Pair 1.35
Mean z-score -1.97
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.516721
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19559852 103 + 23771897
AUACUGUCUAGCCGUUUAGCCUCUGCUUCUGCAUCUAUUUCUUCUUGACUGACGGGAAUUUCU---GGUGGAAUCUCUUCCACCGUCACUGGCUGGACUGGCUUCU
.........((((((((((((..(((....)))................((((.((.....))---(((((((....)))))))))))..)))))))).))))... ( -33.70)
>DroSec_CAF1 3295 103 + 1
AUACUGUCUAGCCGUUUAGCCUCGGCCUCUGCAUCUAUUUCCUCUUGAUUGACAGGAAUUUCU---GGAGGAAUCUCUUCCACCGUCACUGUCUGUAUUGGCUUCU
.........((((((...((....))....))..................(((((((.....(---(((((.....))))))...)).)))))......))))... ( -23.50)
>DroSim_CAF1 3597 103 + 1
AUACUGUCUAGCCGUUUAGCCUCGGCCUCUGCAUCUAUUUCCUCUUGACUGACAGGAAUUUCU---GGAGGAAUCUCUUCCACCGUCACUGGCUGUAUUGGCUUCU
.........(((((..(((((.(((.............(((((.((....)).)))))....(---(((((.....))))))))).....)))))...)))))... ( -27.70)
>DroEre_CAF1 5980 103 + 1
AUACUGUCUAGCCGUUUAGCCUCUGCUUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU---GGAGGAAUCUCUUCCACCGCAGCUGGCUGGACUGGUUUCU
.........((((((((((((.((((..........((((((((......)).))))))...(---(((((.....))))))..))))..)))))))).))))... ( -33.90)
>DroYak_CAF1 3590 103 + 1
AUACUGUCUAGCCGUUUUGCCUCUGCCUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU---GGAGGAAUCACUUCCACCGUCGCUGGCUGGACUGGCUUAU
...(.(((((((((....((...(((....))).................((((((.....)(---(((((.....)))))))))))))))))))))).)...... ( -29.00)
>DroPer_CAF1 3363 106 + 1
AUUUUCUCCAGGCGCUUGGCCUCUGCCGCAGCAUCGAUUUCCUCCUGCGUGGCGUGCAUUUCCAUAGGGGAAACCACCUCCACGGGCACUGGCAGAACUGUGGAAG
......(((((((.....)))((((((((.(((..((.....)).)))...))((((..........((....)).((.....)))))).))))))....)))).. ( -35.80)
>consensus
AUACUGUCUAGCCGUUUAGCCUCUGCCUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU___GGAGGAAUCUCUUCCACCGUCACUGGCUGGACUGGCUUCU
.........((((((((((((...((....))......(((((.((....)).)))))........(((((.....))))).........)))))))).))))... (-19.57 = -20.02 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:35 2006