Locus 7289

Sequence ID 3L_DroMel_CAF1
Location 19,511,376 – 19,511,495
Length 119
Max. P 0.647967
window11847

overview

Window 7

Location 19,511,376 – 19,511,495
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.63
Mean single sequence MFE -38.18
Consensus MFE -27.45
Energy contribution -27.73
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -1.15
Structure conservation index 0.72
SVM decision value 0.24
SVM RNA-class probability 0.647967
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19511376 119 - 23771897
AUAUGUGUUCCUCGCGGGACAACACGUCCCGGUCGAUGAUUAUUUGUCCCGUGUGUUGGCAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACACAGAUGAACCUUCAGGCCAA-UGUA
...(((((((((((((((((.....))))).(((..((.((((.(((((.((......)).))))).))))))..)))....)))))))...)))))......((....))....-.... ( -37.90)
>DroVir_CAF1 4742 107 - 1
AUGUGUGCUCCUCCCGCUUUAGCAUAUCACGGUCGAUGAUGAUUUGCCCGGUGUGCUGGCAGGGCACAUAGCAUGGAUGAUAGCGCGGGCAAACGCAAAAGAACUUA-------------
.(((((((.(((...(((..((((((((..(((.(((....))).))).)))))))))))))))))))))((..........))(((......)))...........------------- ( -33.10)
>DroSim_CAF1 2210 119 - 1
AUAUGUGUUCCUCGCGGGACAACACGUCCCGGUCGAUAAUUAUUUGUCCCGUGUGCUGGCAGGGUACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAACCUUCAGGCCAA-UGUA
...(((((((((((((((((.....))))).((((((((....)))))..(((((((.....)))))))......)))....)))))))...)))))......((....))....-.... ( -36.70)
>DroEre_CAF1 2168 120 - 1
AUAUGUGUUCCUCCCGGGACAACACGUCCCGGUCAAUAAUUAUUUGCCCAGUGUGCUGGCAGGGUACAUAGCAUGGAUGGUAGCGGGGACAGACGCAGAUGAAUCUGUAGGUCAAUAAAA
.....(((((((.(((((((.....)))))))......(((((((((...(((((((.....))))))).)))..))))))...)))))))((((((((....)))))..)))....... ( -39.10)
>DroYak_CAF1 2951 119 - 1
AUAUGUGUUCCUCCCGGGACAAAACGUCCCGGUCGAUGAUUAUCUGUCCCGUGUGCUGACAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAAUCUGCAGGUAAA-AGUA
.(((.....(((.(((((((.....)))))))..........(((((((((((((((.....))))))).((..........)).)))))))).(((((....))))))))....-.))) ( -45.80)
>DroMoj_CAF1 4324 107 - 1
ACGUGUGCUCCUCACGCUUCAGCAUAUCACGGUCAAUGAUUAUCUGGCCGGUGUGCUGGCAGGGCACAUAGCACGGAUGGUAGCGUGGGCAAACACAAAAGAACUUG-------------
..((((....((((((((...((.((((.((((((.........))))))(((((((.....)))))))......))))))))))))))...))))...........------------- ( -36.50)
>consensus
AUAUGUGUUCCUCCCGGGACAACACGUCCCGGUCGAUGAUUAUUUGUCCCGUGUGCUGGCAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAACCUGCAGG_CAA__GUA
...((((.......((((((.....))))))...........(((((((((((((((.....))))))).((..........)).))))))))))))....................... (-27.45 = -27.73 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:11 2006