| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,495,363 – 19,495,469 |
| Length | 106 |
| Max. P | 0.533961 |
| Location | 19,495,363 – 19,495,469 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Mean single sequence MFE | -25.26 |
| Consensus MFE | -20.27 |
| Energy contribution | -19.88 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19495363 106 + 23771897 UAUCGCCGAAAUAAAG-UCAACCAAACUCGGCUGGCUGGGAAAUUGAUUGAGCAGCAUACGCGUUGACAUUUCAAUUAGAAGCCCA-----GGCUGAGUCUAAAGAAAAAUC ................-........(((((((...(((((...(((((((((((((......))))....)))))))))...))))-----))))))))............. ( -26.70) >DroSec_CAF1 6072 100 + 1 ------CGAAAUAAAG-UCAACCAAACUCGGCUGGCUGGGAAAUUGAUUGAGCAGCAUACGCGUUGACAUUUCAAUUAGAAGCCCA-----GGCUGGGUCUAAAGAAAAAUC ------..........-........(((((((...(((((...(((((((((((((......))))....)))))))))...))))-----))))))))............. ( -25.80) >DroSim_CAF1 6212 100 + 1 ------CGAAAUAAAG-UCAACCAAACUCGGCUGGUUGGGAAAUUGAUUGAGCAGCAUACGCGUUGACAUUUCAAUUAGAAGCCCA-----GACUGGGUCUAAAGAAAAAUC ------.(((((...(-(((((........((((.(..(........)..).))))......)))))))))))..((((..((((.-----....))))))))......... ( -24.34) >DroEre_CAF1 6560 111 + 1 UUUUGCCGAAAUAAAG-UCAACCAUACUCGGCUGACUGGAAAAUUGAUUGAGCAGCACACGCGUUGACAUUUCAAUUAGAAGCCCAAGCCAAGCCGGGCCUAAAGGAAAAUC ((((.(((((((...(-(((((........((((.((.((.......)).))))))......)))))))))))..((((..((((..((...)).)))))))).)))))).. ( -25.54) >DroYak_CAF1 6234 106 + 1 UUUUGCCGAAAUAAAG-UCAACCAUACUUGGCUGGCUGGAAAAUUGAUUGAGCAGCACACGCGUUGACAUUUCAAUUAGAAGUCUA-----AGUCGGGCCGAAAGAAAAAUC .....((((.....((-(((.(((....))).)))))(((...(((((((((((((......))))....)))))))))...))).-----..))))..(....)....... ( -24.80) >DroAna_CAF1 3468 103 + 1 -AUUGCCGAAAUAAAACCCAACCAUAAAUGGCUGGCUGGAAAAUUGAUUGAGCAGCAUACGCGUUGACAUUUCAAUUAGAAGCCCA-----GACCAAGCCAAAAAA---AUA -...........................(((((((((((....(((((((((((((......))))....)))))))))....)))-----).)).))))).....---... ( -24.40) >consensus __UUGCCGAAAUAAAG_UCAACCAAACUCGGCUGGCUGGAAAAUUGAUUGAGCAGCAUACGCGUUGACAUUUCAAUUAGAAGCCCA_____GGCCGGGCCUAAAGAAAAAUC ..........................(((((((...((((...(((((((((((((......))))....)))))))))...)))).....))))))).............. (-20.27 = -19.88 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:01 2006