Locus 7270

Sequence ID 3L_DroMel_CAF1
Location 19,459,903 – 19,459,998
Length 95
Max. P 0.663012
window11819

overview

Window 9

Location 19,459,903 – 19,459,998
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -14.12
Consensus MFE -12.42
Energy contribution -12.58
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.88
SVM decision value 0.27
SVM RNA-class probability 0.663012
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19459903 95 - 23771897
UCCGCAUCCCCAUACCCAUUCCCGUAUCCCGCACCCGAAUCCCCUUACCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG---
...((......((((........))))...))................((((.(((((((((..((........))..))))))))).))))...--- ( -14.20)
>DroPse_CAF1 60091 85 - 1
GCCCCAGCCCCAA-------------CCUAGAACUGAGAGCCACCCAACCAGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUCCAGGAAUGUU
.............-------------(((.((((((.............)))....((((((..........)))))).......))).)))...... (  -9.02)
>DroSec_CAF1 101345 82 - 1
UCCGCAUCCCCAU-------------UCUCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG---
.............-------------..(((....)))..........((((.(((((((((..((........))..))))))))).))))...--- ( -13.80)
>DroSim_CAF1 102082 82 - 1
UCCGCAUCCCCAU-------------UCUCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG---
.............-------------..(((....)))..........((((.(((((((((..((........))..))))))))).))))...--- ( -13.80)
>DroEre_CAF1 88230 82 - 1
UUCGCAUCACCAU-------------ACCCGCACCCGGAUCCCAUUCUCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG---
.............-------------..(((....))).........(((((.(((((((((..((........))..))))))))).)))))..--- ( -17.10)
>DroYak_CAF1 140891 77 - 1
----CAUCCCCGU-------------UCCCGUUCCCG-UUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGGAG---
----.........-------------...........-.........(((((.(((((((((..((........))..))))))))).)))))..--- ( -16.80)
>consensus
UCCGCAUCCCCAU_____________UCCCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG___
................................................((((.(((((((((..((........))..))))))))).))))...... (-12.42 = -12.58 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:44 2006