Locus 7266

Sequence ID 3L_DroMel_CAF1
Location 19,454,414 – 19,454,516
Length 102
Max. P 0.852391
window11814

overview

Window 4

Location 19,454,414 – 19,454,516
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 87.65
Mean single sequence MFE -38.67
Consensus MFE -29.88
Energy contribution -32.27
Covariance contribution 2.39
Combinations/Pair 1.07
Mean z-score -3.23
Structure conservation index 0.77
SVM decision value 0.79
SVM RNA-class probability 0.852391
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19454414 102 + 23771897
UCUUUGUCCUUGUCGGGUUGAAGCCAUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCGGUUGCCACUUAGGGUUGCCAACGAGUGCA
....((..(((((..(((...((((..((((((....))))))....(((((((..((..(((....)))..)).)))))))...))))))).)))))..)) ( -33.40)
>DroSec_CAF1 95956 102 + 1
UCUUUGUCCUUGUCGGUUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACGAGUGCA
....((..((((((((((((...((..((((((....))))))....(((((((((....(((....)))..)).)))))))..))))))))))))))..)) ( -44.40)
>DroSim_CAF1 96605 102 + 1
UCUUUGUCCUUGUCGGUUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACGAGUGCA
....((..((((((((((((...((..((((((....))))))....(((((((((....(((....)))..)).)))))))..))))))))))))))..)) ( -44.40)
>DroEre_CAF1 83185 89 + 1
UCU-------------GUACGAGUCCCGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA
..(-------------(((((.....))))))........((((...(((((((((....(((....)))..)).)))))))...))))(((.....).)). ( -28.80)
>DroYak_CAF1 135619 102 + 1
UCUAUGUCCUUGUCGGGUGCAAGCCCUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA
....((..((((((((.(....(((((((((((....))))))....(((((((((....(((....)))..)).))))))).)))))).))))))))..)) ( -43.60)
>DroAna_CAF1 83392 102 + 1
UUUCUGUCCUUGUCGGGUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACCUCAAUGGGCUUCCAGCACUUGCCACUUACGGCAGCCGACAGACGCA
.....(((..((((((.(....(((((((((((....))))))....(((((((((.....))((.....))...))))))).)))))).)))))))))... ( -37.40)
>consensus
UCUUUGUCCUUGUCGGGUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA
.....((.((((((((.(((.......((((((....))))))....(((((((......(((....))).....)))))))....))).)))))))).)). (-29.88 = -32.27 +   2.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:37 2006