| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,202,405 – 2,202,512 |
| Length | 107 |
| Max. P | 0.699440 |
| Location | 2,202,405 – 2,202,512 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.19 |
| Mean single sequence MFE | -22.19 |
| Consensus MFE | -14.19 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2202405 107 + 23771897 AAAAUCUCAAAUUGUGAUUUUAGAAUA----UACUUUACCCUUUUUCUGAGUGCAUCAGGGGUCUUGGGUUUUCUGUUUCAGUUGCCAAUUUGCCACUUUUAUGUGUUCAU ((((((.(.....).)))))).(((((----((....((((..(..((((.....))))..)....))))..........(((.((......)).)))....))))))).. ( -22.40) >DroSim_CAF1 254904 94 + 1 -------------UAGAUUUUAGAAUA----UACUCUACCCUUUUUUUGAGUGCAUCGGGGGUCUUGGGUUUUCUGUUUCAGUUGCCAAUUUGCCACUUUUAUGUGUUCAU -------------.......((((...----...)))).........((((..(((.((((((....(((...(((...)))..))).....))).)))..)))..)))). ( -17.60) >DroEre_CAF1 261311 111 + 1 CAAGUCUCGAACCUUGUUUUUAGAAUAUAUGUACUUAAACCUUUUUUCGAGUGCAUCAGGGGUUUUGGGUUUUCUGUUUCACUUCCCAAUUUGCCACUUUUAUGUGUUCAU ((((........))))......(((((((((((((..((......))..)))))....((.(..(((((...............)))))..).))......)))))))).. ( -23.46) >DroYak_CAF1 253341 108 + 1 CUAGUCUCGAAU-UUGUUUUUAGAAUAUA--UACUUAAUCCUUUUUUUGAGUGCAUCAGGGGUAUUGGGUCUUCUCUUCCAGUUCCCAAUUUGCCACUUUUAUGUGUUCAU ............-.........(((((((--(((((((........))))))(((....(((.((((((........)))))).)))....))).......)))))))).. ( -25.30) >consensus CAAGUCUCGAAU_UUGAUUUUAGAAUA____UACUUAACCCUUUUUUUGAGUGCAUCAGGGGUCUUGGGUUUUCUGUUUCAGUUCCCAAUUUGCCACUUUUAUGUGUUCAU ................................................(((..(((.((((((.(((((....(((...)))..)))))...))).)))..)))..))).. (-14.19 = -15.00 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:34 2006