Locus 7240

Sequence ID 3L_DroMel_CAF1
Location 19,393,694 – 19,393,784
Length 90
Max. P 0.541969
window11768

overview

Window 8

Location 19,393,694 – 19,393,784
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.09
Mean single sequence MFE -26.05
Consensus MFE -18.58
Energy contribution -18.63
Covariance contribution 0.06
Combinations/Pair 1.24
Mean z-score -1.14
Structure conservation index 0.71
SVM decision value 0.02
SVM RNA-class probability 0.541969
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19393694 90 - 23771897
AUUAGAGGGACCUAUAAAGA----GGCAGAGAGGGAGGGCAACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCAGCAAUUA
......(((..........(----((((((...........(((((((.....))))))))))))))(((((.....))))).)))........ ( -24.60)
>DroSec_CAF1 32902 89 - 1
-----AGGGACGGGUACACAGCACGGCAGAAAGGGAGGGCAACACGCUGUACAAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA
-----.....(((((.........(((((((......(....)(((((.....))))).))))))).(((((.....))))))))))....... ( -28.00)
>DroSim_CAF1 32769 89 - 1
-----AGGGACGGGUACACAGCACGGCAGAAAGGGAGGGCAACACGCUGCACAAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA
-----.....(((((.........(((((((......(....)(((((.....))))).))))))).(((((.....))))))))))....... ( -28.00)
>DroEre_CAF1 27821 87 - 1
-----AGGGACGGGGACACAGC--GGUAGAAAGGGAGGGGAACACGCUGCCCGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA
-----.....((((........--..........(((.((((((((((.....)))))))))).)))(((((.....))))).))))....... ( -30.20)
>DroYak_CAF1 58175 87 - 1
-----AGGGACGGGGACACAGC--AGUAGAAAGAGAGAGGCACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA
-----.(((.((....)...((--(((.(((...((.(((((((((((.....)))))))...)))).))..))).))).))))))........ ( -24.80)
>DroAna_CAF1 30828 73 - 1
-----AAGGAUGAU----------GGUU----GGAGGGGCA--GUGGUGCAUGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCUGGCAAUUA
-----.(((.((.(----------((((----(((..((((--(..(.((((....)))).)..).))))..)))))))).)))))........ ( -20.70)
>consensus
_____AGGGACGGGUACACAGC__GGCAGAAAGGGAGGGCAACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA
......(((...............((((((...........(((((((.....))))))))))))).(((((.....))))).)))........ (-18.58 = -18.63 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:51 2006