Locus 7232

Sequence ID 3L_DroMel_CAF1
Location 19,381,671 – 19,381,772
Length 101
Max. P 0.742796
window11757

overview

Window 7

Location 19,381,671 – 19,381,772
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 96.37
Mean single sequence MFE -27.10
Consensus MFE -24.70
Energy contribution -24.32
Covariance contribution -0.39
Combinations/Pair 1.14
Mean z-score -1.18
Structure conservation index 0.91
SVM decision value 0.45
SVM RNA-class probability 0.742796
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19381671 101 + 23771897
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90)
>DroSec_CAF1 14530 101 + 1
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90)
>DroSim_CAF1 16895 101 + 1
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90)
>DroEre_CAF1 18464 101 + 1
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90)
>DroYak_CAF1 48827 101 + 1
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90)
>DroAna_CAF1 21295 101 + 1
AAGACUUUUUGAGUGGACUGCAGUACUCUGCAGAGGUUAAACACUAACCUGCUGAUGCCAAGCACAGCGGCACAACGGCUAGGAAUUUGGAGAGGUCUUUG
((((((((((.((....((((((....))))))((((((.....))))))((((.(((...)))))))(((......)))......)).)))))))))).. ( -33.10)
>consensus
AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA
....(((.(((..(((.((((((....))))))((((((.....)))))).......))).((......))....))).))).....(((((....))))) (-24.70 = -24.32 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:41 2006