| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,357,121 – 19,357,238 |
| Length | 117 |
| Max. P | 0.909095 |
| Location | 19,357,121 – 19,357,238 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 94.30 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -25.03 |
| Energy contribution | -25.25 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.909095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19357121 117 + 23771897 UUUCCCAAUGCCACUGUUGGCCAUCUGCAUCUGCAGCUUUCCCUGACUUAAAGGUCUUCCAUUUCAUUUAUGGCCACAUGCAGUCGGCUUUUCUCGAGCUAAUCCAAUCAAUGCACU .........(((((((((((((((((((....))))........((((....)))).............)))))))...))))).))).........((.............))... ( -29.12) >DroSim_CAF1 7176 117 + 1 UUUCCCAAUGCCACUGUUGGCCAUCUGCAUCUGCAUCUUUCCCUGGCUUAAAGGUCUUCCAUUUCAUUUAUGGCCACAUGCAGUCGGCUUUUCUCGAGCUAAUCCAAUCAAUGCACU .........(((((((((((((((.(((....))).........((((....)))).............)))))))...))))).))).........((.............))... ( -26.12) >DroYak_CAF1 11071 114 + 1 ---AGCAAUGCCACUGUUGGCCAUCUGCAUCCACAGCUUUCCCUGGCUUAAAGGUCUUCCAUUUCAUUUAUGGCCACAUGCAGUCGGCUUUUCUCGAGUUAAUCCAAUCAAUGCACU ---.(((..(((((((((((((((..........((((......))))....((....)).........)))))))...))))).))).......((.....)).......)))... ( -27.80) >consensus UUUCCCAAUGCCACUGUUGGCCAUCUGCAUCUGCAGCUUUCCCUGGCUUAAAGGUCUUCCAUUUCAUUUAUGGCCACAUGCAGUCGGCUUUUCUCGAGCUAAUCCAAUCAAUGCACU .........(((((((((((((((((((....))))........((((....)))).............)))))))...))))).))).........((.............))... (-25.03 = -25.25 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:11 2006