Locus 7211

Sequence ID 3L_DroMel_CAF1
Location 19,353,540 – 19,353,651
Length 111
Max. P 0.998133
window11712

overview

Window 2

Location 19,353,540 – 19,353,651
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 73.28
Mean single sequence MFE -31.48
Consensus MFE -21.16
Energy contribution -20.98
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -2.34
Structure conservation index 0.67
SVM decision value 3.01
SVM RNA-class probability 0.998133
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19353540 111 - 23771897
---------GGAAUUUUGAGAGUCCGUUGAAAUUGGAGGCGGAGUUUUGGAUACCUCCGAAUUCGUCAUGCAACACAAUGGCCAUACGGCAUCCGAGAGCUUUAUAAUUCCCAUCUUCAC
---------((((((...((((..(((((....((((..(((((..........)))))..)))).....))))......(((....)))......)..))))..))))))......... ( -29.90)
>DroSec_CAF1 3693 88 - 1
--------------------------------UUGUAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC
--------------------------------(((((((((((..((((((....)))))))))))).)))))....((((..(((((((........))))))).....))))...... ( -27.30)
>DroSim_CAF1 3734 88 - 1
--------------------------------UUGUAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC
--------------------------------(((((((((((..((((((....)))))))))))).)))))....((((..(((((((........))))))).....))))...... ( -27.30)
>DroYak_CAF1 7377 120 - 1
GAAUUCGUUGGAAUUUGGAGAUUCCGAUAAACUCGGAGGCGGAGUUUUGGAAGGCUCCGAAUUCGCCAUGCAACACAAAGGCCAUACUGCUUCCGAGGGCUUUAUAAGCCCCUUCUUCAU
(((...(((((((((....)))))))))...((((((((((((((((....)))))))......(((............)))......)))))))))((((.....)))).....))).. ( -41.40)
>consensus
________________________________UUGGAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC
.....................................((((((..((((((....))))))))))))..........((((..(((((((........))))))).....))))...... (-21.16 = -20.98 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:58 2006