Locus 7208

Sequence ID 3L_DroMel_CAF1
Location 19,351,007 – 19,351,127
Length 120
Max. P 0.775084
window11704

overview

Window 4

Location 19,351,007 – 19,351,127
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.25
Mean single sequence MFE -39.48
Consensus MFE -31.79
Energy contribution -33.10
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.81
SVM decision value 0.54
SVM RNA-class probability 0.775084
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19351007 120 - 23771897
CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGUCGAGUGGACAACAGUACAGUAAACAAUCGAAAGAGUGAACUUAUGAAAGAAUGUUUGCACUAGC
(((((((((((..((((.((....)))))).(((((.(((((((((((....)))..)))))))).)))))..)))...((.((....)).))............))))))))....... ( -37.20)
>DroSec_CAF1 1173 120 - 1
CAAACAUUGCUCCGGUGAGUAAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGAGGAGUGGCCAACAGUACAGUAAGCAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGG
(((((((((....((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))...(((((((.((....)).))..)))))....)))))))))....... ( -39.50)
>DroSim_CAF1 1199 120 - 1
CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGCGAGGAGUGGCCAACAGUACAGUAAACAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGG
(((((((((((((((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))................))))....(....)...)))))))))....... ( -39.20)
>DroYak_CAF1 4415 119 - 1
CAAACAUUGCUCCGGUGAGUGAAUGCUGCCAGCUGUCG-CCGCCUCUCUGUCGGGAGGAGUGGCGAAGAGUACAGUAAACAAUCGAGGGAGUGAACUUAUGAAACAAUGUUUGCGCUGAC
(((((((((((((..(((.((..(((((...(((.(((-((((..((((....))))..)))))))..))).)))))..)).)))..))))....(....)...)))))))))....... ( -42.00)
>consensus
CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGAGGAGUGGCCAACAGUACAGUAAACAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGC
(((((((((((((((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))................)))))...(....)....))))))))....... (-31.79 = -33.10 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:50 2006