Locus 7175

Sequence ID 3L_DroMel_CAF1
Location 19,235,561 – 19,235,681
Length 120
Max. P 0.707931
window11652

overview

Window 2

Location 19,235,561 – 19,235,681
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -34.57
Consensus MFE -28.20
Energy contribution -29.43
Covariance contribution 1.23
Combinations/Pair 1.15
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 0.37
SVM RNA-class probability 0.707931
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19235561 120 - 23771897
GUGGUGACUCCAUUGGAGUUAUUAGAGCACGGUUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACAUAGUCGCUGCAUUCUUCAGUAACGCCAACUUUAAUCCGGAAA
.((((((((((...)))))))))).....(((...((((....(....)..(((((.(((((...((((..(((......))).))))....)))))....)))))))))...))).... ( -35.50)
>DroSim_CAF1 68252 120 - 1
GUGGUGGCUCCAAUGGAGCUAUUCGAGCACGCUUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACGUAGUUGCUGCAUUCUUCAGAAACACCAACUUUAAUCCGGAAA
...((((((((...))))))))(((((....))))).......(((((((.(((((((((((...((((..(((......))).))))....))))))...))))).)))..)))).... ( -35.70)
>DroYak_CAF1 94328 97 - 1
GUGGAGACUCCGUUGGA-----------------------GUACGGAAGAAUUGGUUCUGAACUGGCGGAAGACCAUGUGGUCGCUGCAUUCUUCAGAAACGCCAACUUUAAUCCGAAAA
......(((((...)))-----------------------)).(((((((.(((((((((((...((((..((((....)))).))))....))))))...))))).)))..)))).... ( -32.50)
>consensus
GUGGUGACUCCAUUGGAG_UAUU_GAGCACG_UUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACGUAGUCGCUGCAUUCUUCAGAAACGCCAACUUUAAUCCGGAAA
..(((((((((...)))))))))....................(((((((.(((((((((((...((((..(((......))).))))....))))))...))))).)))..)))).... (-28.20 = -29.43 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:01 2006