| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,226,820 – 19,226,913 |
| Length | 93 |
| Max. P | 0.692876 |
| Location | 19,226,820 – 19,226,913 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19226820 93 - 23771897 AAUCUCAGUUUUC--GAAGUGACACGUAAACGUAAACAUGUAAUCUCACCCAGCGGCAGAACAGCUGUUGGGAUAUACGCUUCUUGGCU----CAACCU ......((((...--((((((..(((....)))...............(((((((((......))))))))).....))))))..))))----...... ( -26.80) >DroSec_CAF1 55761 95 - 1 AAUCUCAGUUUUUAUCAAGUGACACGUAAACGUAAACAUCUAAUCUCACCCAGCGGCAGAACAGCUGUUGGGAUAGGCGCUUCUUGGAU----CAACCU ..........((((..(((((.((((....)))...............(((((((((......)))))))))...).)))))..)))).----...... ( -23.00) >DroSim_CAF1 59576 95 - 1 AAUCUCAGUUUCGAUCAAGUGACACGUAAACGUAAACAUCUAAUCUCACCCAGCGGCAGAACAGCUGUUGGGAUAGGCGCUUCUUGGCU----CAAACU ......(((((.(((((((...((((....)))...............(((((((((......)))))))))......)...))))).)----)))))) ( -24.70) >DroEre_CAF1 59319 95 - 1 AAUCUCAGUUUUGAUCAAGUGACACGUAAACGUAAACAUGUAAGCUCACCCAGCGGCAGAACAGCUGUUGGGUUAUUUGCUUCUUGUGG----CAACCU ......(((((....((.((...(((....)))..)).)).))))).((((((((((......))))))))))...(((((......))----)))... ( -25.90) >DroYak_CAF1 85165 95 - 1 UAUCUCAGUUUCGAUCAAGUGACACGUAAACGUAAACAUGUAAGCUCACCCAGCGGCAGAACAGCGGUUGGGUUAUUCGCUUCUGGGGU----CAACCU .(((((((...(((....((...(((....)))..))..........(((((((.((......)).)))))))...)))...)))))))----...... ( -26.90) >DroAna_CAF1 45500 89 - 1 AAUUUCA------UGCCAGUGACACGUAAACGUUAUCACAAUGUCUCACCCAGUGGCA----AGCUUAUGGUUUGAGUGCUGUUUUGUUCGGGUAACCC .......------((((.((((.(((....)))..))))...........(((((.((----(((.....)))))..))))).........)))).... ( -18.00) >consensus AAUCUCAGUUUUGAUCAAGUGACACGUAAACGUAAACAUGUAAUCUCACCCAGCGGCAGAACAGCUGUUGGGAUAUGCGCUUCUUGGCU____CAACCU ................(((((..(((....)))...............(((((((((......))))))))).....)))))................. (-18.22 = -18.38 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:55 2006