Locus 7170

Sequence ID 3L_DroMel_CAF1
Location 19,225,880 – 19,225,993
Length 113
Max. P 0.560360
window11646

overview

Window 6

Location 19,225,880 – 19,225,993
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 91.98
Mean single sequence MFE -28.29
Consensus MFE -23.54
Energy contribution -24.30
Covariance contribution 0.76
Combinations/Pair 1.13
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.05
SVM RNA-class probability 0.560360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19225880 113 - 23771897
AAUCCGUGUGCCUAUUACUGUUAGAGUCGGGUAAUUUCCGUGCUCUCGCCUACGGCCACACUGCUCCAGUGU-UAGUAACUUAACUUUAGGUAAUUUUGGCCAUAAUUUGGCAU
.......(((((.((((..((.(((((((((.....)))).))))).))....((((((((((...))))))-.....(((((....)))))......)))).))))..))))) ( -33.40)
>DroSec_CAF1 54630 113 - 1
AAUCCGUGUGUCUAUUACUGUUAGAGUCAGGUAAUUUCAAUGCUCCCGCCUACGGGCACACUGCUCCACUGU-UAGUAACUUAACUUUAGGUAAUUUUGGCCACAAUUUGGCAU
.....(((.(((.((((((..((((((.((((...............(((....)))..(((((......).-)))).)))).))))))))))))...)))))).......... ( -26.70)
>DroSim_CAF1 58463 113 - 1
AAUCCGUGUGUCUAUUACUGUUAUAGUCGGGUAAUUUCAAUGGUCCCGCCUACGGCCACACUGCUCCAGUGU-UAGUAACUUAACUUUAGGUAAUUUUGGCCACAAUUUGGCAU
.....(((.(((.((((((.....(((..(((.........((((........))))((((((...))))))-.....)))..)))...))))))...)))))).......... ( -26.70)
>DroEre_CAF1 58722 114 - 1
AAUCCGCGUGUCUGUUACUUUUAGAGUCGGGUAAUUUCUAAAAUCCCGCCUACGGGCACACUGCUCCAGUGUUUAGUAACUUAACUUUAGGUAAUUUUGGCCACAAUUUGGCAU
.............((((((..((((((..(((.....((((......(((....)))((((((...))))))))))..)))..))))))))))))....((((.....)))).. ( -30.10)
>DroYak_CAF1 84531 113 - 1
AAUCCGUUUGUCUAUUACUGUUGGAGUCCGGUAAUUUCUAUAAUCCCGCCUACGGGCACACUGCUCCAGUGU-UAGUAACUUAAAUUUAGGUAAUUUUGGCCACAAUUUGGCAU
.......((..((((((((((((((((..((..............))(((....))).....)))))))...-))))))........)))..)).....((((.....)))).. ( -24.54)
>consensus
AAUCCGUGUGUCUAUUACUGUUAGAGUCGGGUAAUUUCAAUGAUCCCGCCUACGGGCACACUGCUCCAGUGU_UAGUAACUUAACUUUAGGUAAUUUUGGCCACAAUUUGGCAU
.....(((.(((.((((((..((((((..(((...............(((....)))((((((...))))))......)))..))))))))))))...)))))).......... (-23.54 = -24.30 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:54 2006