Locus 717

Sequence ID 3L_DroMel_CAF1
Location 2,174,138 – 2,174,233
Length 95
Max. P 0.689651
window1099

overview

Window 9

Location 2,174,138 – 2,174,233
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.96
Mean single sequence MFE -20.90
Consensus MFE -14.91
Energy contribution -15.67
Covariance contribution 0.75
Combinations/Pair 1.18
Mean z-score -1.99
Structure conservation index 0.71
SVM decision value 0.33
SVM RNA-class probability 0.689651
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2174138 95 - 23771897
ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAAUCCCCUUCCCUUUUCCAAAACCACCUCUUUG
.....((((((...((((((....))))))....))))......(((((....)))))..........................))......... ( -20.90)
>DroPse_CAF1 264816 82 - 1
ACAGCAGGCCGACAG--GCUACCAGCUACCCCACUGGCAAUUAACAGCUAACAAGGAGAACGAA-CCC-CUCCCUAUCU---AACCCUU------
..(((.((((....)--))).((((........)))).........))).....((((......-...-))))......---.......------ ( -17.00)
>DroSec_CAF1 226096 93 - 1
ACAGCGGACCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACA-A-CCCGCUCCCUUUCCCAAAACCCCUCGUUUG
..(((((.(((...((((((....))))))....))).......(((((....)))))....-.-.)))))........................ ( -22.10)
>DroSim_CAF1 226533 94 - 1
ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA-CCCUCUCCCUUUUCCAAAACCCCUCGUUUG
..(((((((((...((((((....))))))....))))......(((((....)))))......-.......................))))).. ( -21.10)
>DroEre_CAF1 230845 92 - 1
ACAGCGGGCCAAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA-CCUUCACCCUUU-UCAAAGCC-CCCCUUCG
.....((((.(((((.........(((((((....)))))))..(((((....)))))......-........))))-)....)))-)....... ( -21.80)
>DroYak_CAF1 224268 93 - 1
ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACCGGCAAUUAACAGCUAACAAGCUGGACAAA-CCCUCACCCUUUUUGAAAGUC-CCCCUUUG
.(((.((((((...((((((....))))))....))))......(((((....)))))......-.....................-..)).))) ( -22.50)
>consensus
ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA_CCCUCUCCCUUUUCCAAAACCCCCCCUUUG
.....((((((...((((((....))))))....))))......(((((....)))))..............))..................... (-14.91 = -15.67 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006