Locus 7142

Sequence ID	3L_DroMel_CAF1
Location	19,185,668 – 19,185,761
Length	93
Max. P	0.996598

overview

Window 7

Location	19,185,668 – 19,185,761
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	94.07
Mean single sequence MFE	-14.38
Consensus MFE	-12.72
Energy contribution	-12.96
Covariance contribution	0.24
Combinations/Pair	1.06
Mean z-score	-2.09
Structure conservation index	0.88
SVM decision value	2.72
SVM RNA-class probability	0.996598
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19185668 93 - 23771897
UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAAACAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
((((.(((............))).))))........................((....)).(((((.....)))))................. ( -15.70)
>DroSec_CAF1 14152 91 - 1
UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAA--AAACCAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
((((.(((............))).))))...............--...((..((....)).(((((.....))))).........))...... ( -17.20)
>DroSim_CAF1 17693 93 - 1
UGGGGGAUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAACCAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
((((.(((((......))))..).))))....................((..((....)).(((((.....))))).........))...... ( -13.30)
>DroEre_CAF1 17048 88 - 1
UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAG----AAA-AAAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
((((.(((............))).))))............----...-....((....)).(((((.....)))))................. ( -15.70)
>DroYak_CAF1 38096 92 - 1
UGGGGACUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGGAAAAAA-AAAACAGAAGUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
..(((.....((((.....)))).)))....................-....(..(((((.(((((.....)))))..)))))..)....... ( -10.00)
>consensus
UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAAACAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU
((((.(((............))).))))........................(..(((((.(((((.....)))))..)))))..)....... (-12.72 = -12.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:07 2006