Locus 7139

Sequence ID 3L_DroMel_CAF1
Location 19,184,148 – 19,184,253
Length 105
Max. P 0.733180
window11591

overview

Window 1

Location 19,184,148 – 19,184,253
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.06
Mean single sequence MFE -22.27
Consensus MFE -6.77
Energy contribution -6.89
Covariance contribution 0.12
Combinations/Pair 1.31
Mean z-score -1.95
Structure conservation index 0.30
SVM decision value 0.43
SVM RNA-class probability 0.733180
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19184148 105 - 23771897
CAAACCCCUUGUUCAGAAG--------------CUUCCCCUAUAGAGUACACUCUGUAAAGCCGUUCAAGCGG-CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAA
........(((((......--------------.......(((((((....))))))).((((((....))))-))..((((((...................))))))..))))).... ( -22.11)
>DroSim_CAF1 16135 84 - 1
-----------------------------------UCCAUUAUAGAGUACACUUUAUAAAGCCGUUCAAGCGG-CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG
-----------------------------------....((((((((....))))))))((((((....))))-))..((((((...................))))))........... ( -19.21)
>DroEre_CAF1 15428 105 - 1
CAAGUCGCUUGUUCAGAAG--------------UCUUUAUUUUAGAGUAUACUCUAUAAAGCCGUUCGAGCGG-CUCAAGUUGUGCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG
..(((.((((......(((--------------((.......(((((....)))))...((((((....))))-))...........))))).........)))).)))........... ( -23.76)
>DroYak_CAF1 36450 95 - 1
CAAGUCCAUCAAC------------------------CAUUUUAGAGUAUACUCUAUAAGGCCGUUCAAGCGG-CUCAAGUUGUCCCGACUUAACUAAUUAAAGCUGCUCAAACAAAUAG
.(((((...((((------------------------.....(((((....)))))...((((((....))))-))...))))....)))))............................ ( -20.80)
>DroAna_CAF1 5850 111 - 1
CCAGCCCCUUCUUCAGACAUCCCAGGUCGAGGGGCUUCAUUAUAGAGA---------AAUGCUUUUGAAACGGCCUGAAGCAGCCCGGACUUAACUAAUUAAAGCAACUCAAAUAAAUUG
..((((((((.....(((.......)))))))))))........(((.---------..((((((.....(((.(((...))).))).............)))))).))).......... ( -25.47)
>consensus
CAAGCCCCUUGUUCAGA__________________UCCAUUAUAGAGUACACUCUAUAAAGCCGUUCAAGCGG_CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG
............................................((((...........((((((....)))).))...(((....................))).)))).......... ( -6.77 =  -6.89 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:02 2006