| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,169,191 – 19,169,311 |
| Length | 120 |
| Max. P | 0.525792 |
| Location | 19,169,191 – 19,169,311 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.25 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -27.46 |
| Energy contribution | -27.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19169191 120 - 23771897 UCUAAUUUCAUGCUGCCUUGUUCUGAAACCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGUUAGUCCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((..(.........)..))........))))))))))..).)))))))))...... ( -25.20) >DroSim_CAF1 2014 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGGGCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((.(((((....)))))))........))))))))))..).)))))))))...... ( -36.20) >DroEre_CAF1 1592 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCACCGGUGGUCCCUCCAUUCACUUUCGGGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......)))))))......((((((..............(((....)))(((((.....)))))..))))))))))..).)))))))))...... ( -30.60) >DroYak_CAF1 3493 120 - 1 UCUAAUUUCAUGCUGCCUUGUUCUGAGCCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGUCCCUCCAUUCACUUUCGAGGCUUGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))....((.((((...)).)).)).........))))))))))..).)))))))))...... ( -30.80) >consensus UCUAAUUUCAUGCUGCCUUGUUCUGAACCCCUAGAGCAGAAAAAUGAAAGCUUGUAAACAUUUUGGUCCCCAUCGGUGGUCCCUCCAUUCACUUUCGAGGCUCGGGUGAAAUUAAUAAAU ..(((((((((.(.(((((((((((......))))))........(((((..((....))...(((...(((....))).....)))....))))))))))..).)))))))))...... (-27.46 = -27.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:19 2006