Locus 7107

Sequence ID 3L_DroMel_CAF1
Location 19,162,264 – 19,162,379
Length 115
Max. P 0.950118
window11530

overview

Window 0

Location 19,162,264 – 19,162,379
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -22.46
Consensus MFE -20.10
Energy contribution -19.86
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value 1.40
SVM RNA-class probability 0.950118
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19162264 115 - 23771897
UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGAUGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
((((.....((((..(((....)))..))))((((((....(((....)))..((((......))))..........)))))).))))........................... ( -21.80)
>DroSec_CAF1 25268 115 - 1
UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCGGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
...((((.(((((..(((....)))..)))(((((((....((((...((...............))..))))....)))))))))))))......................... ( -23.76)
>DroSim_CAF1 24825 115 - 1
UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCGGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
...((((.(((((..(((....)))..)))(((((((....((((...((...............))..))))....)))))))))))))......................... ( -23.76)
>DroEre_CAF1 25702 115 - 1
CCCUUUCACCUAAAUGAAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
((((((((......)))))...........(((((((....(((....)))..((((......))))..........))))))))))............................ ( -21.50)
>DroYak_CAF1 25635 114 - 1
CCCUUUCACCUAAAUGAA-AAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
((((((((......))))-)..........(((((((....(((....)))..((((......))))..........))))))))))............................ ( -21.50)
>consensus
UCCUUUCACCCAAAUGGAAAAAUCCUCUUGGUCUGCGAAUCAGCAUCAGCUAAGCAAACAACAUUGCACUGCCAAACUGCGGACGGGAAAAUCAGCAUGCAAAUAAAAUAAAAUA
...((((.(((((..(((....)))..)))(((((((....(((....)))..((((......))))..........)))))))))))))......................... (-20.10 = -19.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:01 2006