| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,154,278 – 19,154,395 |
| Length | 117 |
| Max. P | 0.578069 |
| Location | 19,154,278 – 19,154,395 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.19 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19154278 117 + 23771897 AUCCACUCUAUUAACACAAA--CUC-CCUCAGUUUACAGGGUAGCCACAAAAUGGCGUUAAAAAGCCACCAAGCCCAACUCCAAUCGAGACUCAGCUUUUCGCUUUUCUUCCCGCUCCCA ..........(((((.....--..(-(((........))))..((((.....)))))))))(((((....((((....(((.....))).....))))...))))).............. ( -19.50) >DroSec_CAF1 17145 117 + 1 AUCCACACUAUUAACACAAA--AUC-CCUUAGAUUACAGGGUAGCCACAAAAUGGCGUUAAAAAGCCACCAAGCCCAACUCCAUUCGAGACUCAGCUUUUUGCUUUCCUUCCCGCUCCCA ..........(((((.....--..(-(((........))))..((((.....)))))))))(((((....((((....(((.....))).....))))...))))).............. ( -19.50) >DroAna_CAF1 10186 107 + 1 ACCUCCA-----ACCACCAACCAUCUUCUGGCAUUACAGGGUACCCACAAAAUGGCGUUUAAAAGCCACCAAACCCAACUCUAUUCAAGGUUUAGCUUUU-GCUUUCUUUUCC------- ......(-----(((.....(((.....))).......((((..........((((........))))....))))............)))).(((....-))).........------- ( -15.14) >DroSim_CAF1 16797 117 + 1 AUCACCACUAUUAACACAAA--AUC-CCUCAGAUUACAGGGUAGCCACAAAAUGGCGUUAAAAAGCCACCAAGCCCAACUCCAAUCGAGACUCAGCUUUCCGCUUUCCUUCCCGCUCCCA ..........(((((.....--..(-(((........))))..((((.....)))))))))(((((....((((....(((.....))).....))))...))))).............. ( -19.50) >DroEre_CAF1 17728 115 + 1 AUGGACGCGG--CACACAGA--AUG-CCUCAGAUUACAGGGUAGCCACAAAAUGGCGUUAAAAAGCCACCAAGCCCAGCUCCAAUCGAGUCCCAGCUUUUCGCUUUCCUUCCCGUUCCCA ..(((((.((--((......--.))-)).)........(((..((((.....)))).....(((((....((((...((((.....))))....))))...)))))....)))))))... ( -27.10) >consensus AUCCACACUAUUAACACAAA__AUC_CCUCAGAUUACAGGGUAGCCACAAAAUGGCGUUAAAAAGCCACCAAGCCCAACUCCAAUCGAGACUCAGCUUUUCGCUUUCCUUCCCGCUCCCA ......................................(((..((((.....)))).....(((((....((((....(((.....))).....))))...)))))....)))....... (-12.98 = -13.42 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:48 2006