Locus 710

Sequence ID 3L_DroMel_CAF1
Location 2,153,587 – 2,153,707
Length 120
Max. P 0.500000
window1087

overview

Window 7

Location 2,153,587 – 2,153,707
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.06
Mean single sequence MFE -36.58
Consensus MFE -8.10
Energy contribution -7.77
Covariance contribution -0.33
Combinations/Pair 1.56
Mean z-score -2.25
Structure conservation index 0.22
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2153587 120 - 23771897
GCUUUAAUUCCGUAUCCCCCGAACUGGCUAAGCACCUCCUCCACCGCCAGUUGGCCAAGUCGAAACUGUAUCCCGAACGGUUCUAUUUCACUAGGGAUAUUCGAGUAAAGUACUACCACU
((((((.(((.(((((((.(((..(((((((((............))...)))))))..))).((((((.......))))))...........)))))))..)))))))))......... ( -30.40)
>DroGri_CAF1 200956 120 - 1
GCCACGACUCGGUGCCGCCAGAGUUUGCUCAGCAUUUGCUCUAUCGUAGCGUGGCCAAGUCGCAGCUAUAUCCGGAAAGAUUCUAUUUUUCAAGGGAUGGCCGCACCAAGUACUACACAC
......(((.(((((.((((((((.(((...)))...)))))...((((((((((...))))).)))))((((.(((((((...)))))))...))))))).))))).)))......... ( -40.60)
>DroEre_CAF1 211526 120 - 1
GCUUCAAUUCCGUAUCCCCCGACCUGGCCAAGCACCUGCUCCAUCGCCAGUUGACCAAGUCGAAACUGUACCCCGAACGGUUCUACUUCUCGAGGGAUAUUCGAGUGAAGUACUAUCACU
((((((.(((.(((((((.(((.(((((..(((....))).....)))))......((((.(((.((((.......))))))).)))).))).)))))))..)))))))))......... ( -36.00)
>DroYak_CAF1 203600 120 - 1
GCUUCAACUCCGUAUCCCCCGACCUGGCCAAGCACCUGCUCCACCGCCAGUUGACCAAGUCGAAACUGUACCCCGAACGGUUCUACUUCUCGAGGGAUAUUCGAGUAAAGCACUACCACU
((((..((((.(((((((.(((.(((((..(((....))).....)))))......((((.(((.((((.......))))))).)))).))).)))))))..)))).))))......... ( -36.40)
>DroMoj_CAF1 204835 120 - 1
GCAACCAUUCGGUUGCUCCAGAGUUCGCUCAGCAUUUGUUGCAUCGCAGCGUGGCCAAGUCGCAGCUGUAUCCAGAGAGAUUCUACUUUUCAAGAGAUGGCCGCACCAAAUACUAUAAUA
((((((....))))))....(((....)))((.(((((((((...)))))(((((((..((....(((....))).((((.......))))..))..)))))))...)))).))...... ( -34.80)
>DroAna_CAF1 202998 120 - 1
GCCACAACUCUGUGACCCCUGAAUUCGCCCCGAACCUGCUACAUAGGCAGGUGAUCAAGUCGCAACUGUAUCCCGAGAGGUACUACUUCUCGCGGGACGGAAGAGUCAAGCACUACCACU
((....((((((((((...(((..(((...)))(((((((.....)))))))..))).)))))..((((.((((((((((.....))))))).))))))).)))))...))......... ( -41.30)
>consensus
GCUACAACUCCGUAUCCCCCGAACUGGCCAAGCACCUGCUCCAUCGCCAGGUGACCAAGUCGAAACUGUAUCCCGAAAGGUUCUACUUCUCGAGGGAUAGUCGAGUCAAGUACUACCACU
...............(((.....(((((..(((....))).....)))))(((((...)))))..............................)))........................ ( -8.10 =  -7.77 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:09 2006