Locus 7087

Sequence ID 3L_DroMel_CAF1
Location 19,145,401 – 19,145,521
Length 120
Max. P 0.742465
window11497

overview

Window 7

Location 19,145,401 – 19,145,521
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.11
Mean single sequence MFE -37.45
Consensus MFE -29.50
Energy contribution -31.08
Covariance contribution 1.59
Combinations/Pair 1.09
Mean z-score -2.75
Structure conservation index 0.79
SVM decision value 0.45
SVM RNA-class probability 0.742465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19145401 120 - 23771897
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80)
>DroSec_CAF1 8298 120 - 1
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80)
>DroAna_CAF1 1410 108 - 1
AAAAUUGACGAGUUCUGAUGGCUGACAGUGCGGUUGGGGCAUGCC--CCAUCCCACCUG--C--------CAUCGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAGAUGGAAAUAGGAAA
........(...((((((((((.....(((.((.(((((....))--))).)))))..)--)--------)))).((((((((..(((.....)))..))))))))..))))...).... ( -36.20)
>DroSim_CAF1 7951 120 - 1
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.80)
>DroEre_CAF1 8718 120 - 1
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAAUGAAAAAUGCAUGAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... ( -37.90)
>DroYak_CAF1 8746 120 - 1
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAAUGAAAAAUGCAGAAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).(((((((((((...((((......))))..))).....((((((.(....).))))))..))))))))..... ( -37.20)
>consensus
AAAAUUGACAAGUUUUGAUGGCUGACAGUGCGGUUGAGCCGCGCUGGCUUUUCCACAUUUUCCCGCACAGUUGGGUUAUGCAUGAUUUGCAGUGAAAAAUGCAUAAAUGGAAAAGGAAAA
..........((((.....))))..((((((((.....)))))))).((((((((......((((......))))((((((((..(((.....)))..)))))))).))))))))..... (-29.50 = -31.08 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:29 2006