| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,117,735 – 2,117,826 |
| Length | 91 |
| Max. P | 0.651106 |
| Location | 2,117,735 – 2,117,826 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.93 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -13.66 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2117735 91 - 23771897 UUCUUUUU--------------------CGUAAUGCUAUAUGUUUUUACUUUAGCUCUGGAACCCACAGAGUUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ........--------------------......(((((............((((((((.......))))))))....((((.((((....))))..))))...))))).. ( -16.90) >DroSec_CAF1 170110 109 - 1 UGCUUCUUCAAUUGCU-UAACAAUAAAUCUUAAUACUAUAUCU-UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ......(((.((((..-...))))...............((((-(..(((.((((((((.......))))))))...)))...))))).........))).((....)).. ( -17.80) >DroSim_CAF1 171431 109 - 1 UUCGUCUUUGAUUGCU-UAACAAUAACGCGUAAUACUGUAUCU-UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCGAAUGCCAUGGCUC ((((.((((((..(((-............((((..........-.))))..((((((((.......))))))))...))).)))))).........)))).((....)).. ( -21.50) >DroEre_CAF1 174486 109 - 1 UUCCACUUCUAUUGCU-UAAAUACAAUUCGUCAAAAUUUAUCU-CGUCUUGUAGCUCUGGAACCCACAGAGUUGCCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCGC ................-...........(((((..........-......(((((((((.......)))))))))...((((.((((....))))..))))....))))). ( -19.60) >DroYak_CAF1 167421 109 - 1 UUGUACUUCAGAUGCU-UAAAUAUAAUUCGUAAUACUUUAUCU-CAUCUUCCAGCUCUGGAACCUACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCGC .........(((((..-(((((((........))).))))...-)))))...(((((((.......))))))).....((((.((((....))))..))))((....)).. ( -18.60) >DroAna_CAF1 170671 106 - 1 UAGUACUUGUGGCACUCUGAGACUA---AGUAACUCU-UCCCU-AUUCCUCCAGCUUUGGAGCCCACUGAGUUGCCCAGCUUCAAGGUGCCUCUGUCAAACGCCAUGGCCC ..(.((..(.(((((..(((..((.---.(((((((.-.....-....((((......))))......)))))))..))..)))..))))).).)))....((....)).. ( -30.69) >consensus UUCUACUUCAAUUGCU_UAAAAAUAA_UCGUAAUACUAUAUCU_UUUACUUUAGCUCUGGAACCCACAGAGCUACCCAGUUUCAAGGUUCCCCUUUCAAAUGCCAUGGCUC ...................................................((((((((.......))))))))....((((.((((....))))..))))((....)).. (-13.66 = -13.13 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:03 2006