Locus 7062

Sequence ID 3L_DroMel_CAF1
Location 19,122,737 – 19,122,844
Length 107
Max. P 0.789882
window11447

overview

Window 7

Location 19,122,737 – 19,122,844
Length 107
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 82.88
Mean single sequence MFE -25.59
Consensus MFE -15.26
Energy contribution -17.58
Covariance contribution 2.32
Combinations/Pair 1.15
Mean z-score -2.27
Structure conservation index 0.60
SVM decision value 0.58
SVM RNA-class probability 0.789882
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19122737 107 + 23771897
UAAACACAGAUGGAAAACGAUUCCGUAUGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAACCCUGUGUUGGGUUUUGUUUUGC-GGAG----GACUGCAAC
.........((((((.....)))))).(((((..............((((........))))((((((((((((......))))))))))))..-....----..))))).. ( -27.30)
>DroSec_CAF1 10216 111 + 1
UAAACGCAGAUGGAAAACGAUUCCGUUUGCAGAUGAAACUAAAAAACUGAUUUGAAAUUUAGAAAAUACAACCCUGUGUUGGGUUUUGUUUUGC-AGGGAACUGACUGCAAC
.....((((((((((.....))))))))))................((((........))))((((((.(((((......))))).))))))((-((........))))... ( -31.40)
>DroSim_CAF1 11176 97 + 1
UAAACGCAAAUGGAAAACGAUUCCGUGCGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAGCCCUGUG----------UUUUGC-AGAG----GACUGCCAC
.....(((...((((.....)))).)))((((..............((((........))))..........(((.((----------.....)-).))----).))))... ( -19.60)
>DroEre_CAF1 3687 107 + 1
UAAACGCAGAUGGAAAACGAUUUCGUGAGCAGAUAAAACUGAAAAACUGAUACGAAAUUUAGA-AAUAAAGCCUUGUGAUGGGCUUUGUUUCACUAGGG----GACUGUAGC
.....((((.........(((((((((..(((..............))).)))))))))..((-((((((((((......)))))))))))).......----..))))... ( -28.94)
>DroYak_CAF1 8651 107 + 1
UAAACGCAGAUGGAAAACGAUACCGUGAGCAGAUAAAACUGAAAAACUGAGUUAGAAUUUAGA-AAUAAAACCUUGUGUUGGGUUUUGAUUUGCCAGAG----GACUGAAAC
......(((.((.....))...((.((.((((((............((((((....)))))).-..((((((((......))))))))))))))))..)----).))).... ( -20.70)
>consensus
UAAACGCAGAUGGAAAACGAUUCCGUGAGCAGAUAAAACUGAAAAACUGAUUUGAAAUUUAGAAAAUAAAACCCUGUGUUGGGUUUUGUUUUGC_AGAG____GACUGCAAC
.........((((((.....))))))..((((..............((((........))))((((((((((((......)))))))))))).............))))... (-15.26 = -17.58 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:40 2006