Locus 7058

Sequence ID 3L_DroMel_CAF1
Location 19,116,864 – 19,116,973
Length 109
Max. P 0.553614
window11442

overview

Window 2

Location 19,116,864 – 19,116,973
Length 109
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -24.05
Consensus MFE -17.17
Energy contribution -17.23
Covariance contribution 0.06
Combinations/Pair 1.11
Mean z-score -1.50
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.553614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19116864 109 - 23771897
GAUGGACCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGUCCGU--------
.((((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))))-------- ( -24.10)
>DroSec_CAF1 4421 109 - 1
GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC--------
...((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))..-------- ( -25.20)
>DroSim_CAF1 5352 109 - 1
GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU--CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC--------
...((((.....((((.........((.....)).....((((--(.....((.......)).(((...........)))..........))))).)))).....))))..-------- ( -25.20)
>DroAna_CAF1 4512 110 - 1
GAUGGGCCACAUGCACAAACAAUUUGCGUUUUGCUGAAAACUUCCCACAAAGCAACAAAAGCAGCCAAACAUCAAAGGAU---------GCAGAGGGUGCUCCAAGACCCCAACUUGCC
..((((......((((......(((((((((.((((.........(.....).........)))).))))(((....)))---------)))))..))))........))))....... ( -21.71)
>consensus
GAUGGGCCACAUGCACAAACAAUUUGCAUUCUGCUAAAACUUU__CACAAAGCAACAAAAGCAGCCGAACAUCAAAGGGCAAAACCGUAGGAAAGAGUGCUUCAAGCCCGC________
...((((.....((((........(((....((((...............))))......)))(((...........)))................)))).....)))).......... (-17.17 = -17.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:35 2006