Locus 7055

Sequence ID 3L_DroMel_CAF1
Location 19,113,365 – 19,113,459
Length 94
Max. P 0.967044
window11439

overview

Window 9

Location 19,113,365 – 19,113,459
Length 94
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -15.10
Consensus MFE -15.10
Energy contribution -15.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 1.00
SVM decision value 1.60
SVM RNA-class probability 0.967044
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19113365 94 + 23771897
UUUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA
.......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10)
>DroSec_CAF1 915 94 + 1
CCUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA
.......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10)
>DroSim_CAF1 1827 94 + 1
CCUACCA----UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA
.......----.........(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10)
>DroYak_CAF1 1962 98 + 1
CGUCCCACUACCCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA
....................(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ ( -15.10)
>consensus
CCUACCA____UCACUUUACACUUUAAGCCCCAACUCCUUUGUUCGGCGCUGAAAGUCCUUCCAUUGUUUUUCUGAAUGAAUGACAUUUUAAUUAAUA
....................(((((.(((((.(((......))).)).))).)))))........((((.(((.....))).))))............ (-15.10 = -15.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:32 2006