Locus 7047

Sequence ID 3L_DroMel_CAF1
Location 19,093,424 – 19,093,525
Length 101
Max. P 0.626141
window11430

overview

Window 0

Location 19,093,424 – 19,093,525
Length 101
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 85.38
Mean single sequence MFE -29.50
Consensus MFE -21.51
Energy contribution -21.68
Covariance contribution 0.17
Combinations/Pair 1.17
Mean z-score -2.58
Structure conservation index 0.73
SVM decision value 0.19
SVM RNA-class probability 0.626141
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19093424 101 + 23771897
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCACA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CGAACACACAAAGCGA-AAAAAAAA------AAAA
(((.(((((........)))))))).(((((((((((((((-(((....)..)))))))..)--)))))((....)-)............)))-).......------.... ( -30.50)
>DroSec_CAF1 11009 108 + 1
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACACACAAAGCGGCAACAAAAAAAAACAAAAA
.((.(((((........)))))))((((.((((((((((((-(((....)..)))))))..)--)))))((....)-).......).))))(....)............... ( -30.50)
>DroSim_CAF1 10818 102 + 1
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACAAACAAAGCGGCAAAAAAAA------AAAA
...........(((((.((.((((((((((.((((((((((-(((....)..)))))))..)--))))))))))..-........)))))))))))......------.... ( -29.90)
>DroEre_CAF1 11792 97 + 1
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCUCGGGGCAC-CAAACACACAAAGCAGAAAAAAAA-----------
.((.(((((........)))))))(((((((.(((((((((-(((....)..)))))))..)--))))))))))..-........................----------- ( -28.30)
>DroYak_CAF1 11007 96 + 1
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACACACAAAGCAGAAAA-AAA-----------
.((.(((((........)))))))((((.((((((((((((-(((....)..)))))))..)--)))))((....)-).......).))))......-...----------- ( -29.20)
>DroAna_CAF1 11749 101 + 1
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGUUGCCGCCACAAAUUGCGAGUAAUUGCGGAAUGUGCCGCAAGGCACACAUACAGAGAAAGAAA-----AAAA------CAAA
..(((.((((((((((.(((..((((.........)))).....))))).))))))))...((((((....))))))))).............-----....------.... ( -28.60)
>consensus
CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA_AUCGCGAGUAAUUGUGGAAU__GCCACGGGGCAC_CAAACACACAAAGCAG_AAAAAAAA______AAAA
.((.(((((........)))))))((((((.((((.(((((...(....)....))))).....))))))))))...................................... (-21.51 = -21.68 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:23 2006