Locus 704

Sequence ID 3L_DroMel_CAF1
Location 2,112,909 – 2,113,011
Length 102
Max. P 0.995468
window1078

overview

Window 8

Location 2,112,909 – 2,113,011
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 94.04
Mean single sequence MFE -20.66
Consensus MFE -18.60
Energy contribution -18.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.90
SVM decision value 2.58
SVM RNA-class probability 0.995468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2112909 102 + 23771897
AAACAUGUUUUGAGACCUAAAGUCUUUGUAUGAGAUGUUUGCGAAAACAUUUUAGUGCUG---AAUAAAACAUUGCAAAAAUGUGGGUUAAGUAAACAAAAAUCU
.....(((((...(((((....((...(((((((((((((....)))))))))).))).)---).....(((((.....))))))))))....)))))....... ( -20.20)
>DroSec_CAF1 164358 102 + 1
AAACAUGUUUUGAGACCUAAAGACUUUGUAUGAGAUGUUUGCGAAAACAUUUUAGUGCUG---AAUAAAACAUUGCAAAAAUGUGGGUUAAAUAAACAAAAAUCU
.....(((((...((((((.....((((((((((((((((....))))))))))((....---......))..))))))....))))))....)))))....... ( -19.90)
>DroSim_CAF1 165982 102 + 1
AAACAUGUUUUGAGACCUAAAGGCUUUGUAUGAGAUGUUUGCAAAAACAUUUUAGUGCUG---AAUAAAACAUUGCAAAAAUGUGGGUUAAAUAAACAAAAAUCU
.....(((((...(((((...(((......((((((((((....))))))))))..))).---......(((((.....))))))))))....)))))....... ( -20.60)
>DroEre_CAF1 168853 105 + 1
AAACAUGUUUUGAGACCUAAAGUCUUUGUAUGAGAUGUUUGCGAAAACAUUUUAGUGUUGAUAAAUAAAACAUUGCAAAAAUGUGGGUUAAAUAAACAACAAUCU
.....(((((...((((((.....((((((((((((((((....))))))))))(((((.........)))))))))))....))))))....)))))....... ( -22.40)
>DroYak_CAF1 162626 105 + 1
AAACAUGUUUUGAGACCUAAAGACUUCGUUUGAGAUGUUUGCGAAAACAUUUUAGUGCUGAUAAAUAAAACAUUGCCAAAAUGUGGGUUGAAUAAACAAAAAUGU
.....(((((...(((((.........(((((((((((((....))))))))))).))...........(((((.....))))))))))....)))))....... ( -20.20)
>consensus
AAACAUGUUUUGAGACCUAAAGACUUUGUAUGAGAUGUUUGCGAAAACAUUUUAGUGCUG___AAUAAAACAUUGCAAAAAUGUGGGUUAAAUAAACAAAAAUCU
.....(((((...(((((............((((((((((....))))))))))...............(((((.....))))))))))....)))))....... (-18.60 = -18.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:59 2006