Locus 7034

Sequence ID 3L_DroMel_CAF1
Location 19,040,173 – 19,040,267
Length 94
Max. P 0.684338
window11412

overview

Window 2

Location 19,040,173 – 19,040,267
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.09
Mean single sequence MFE -16.75
Consensus MFE -9.16
Energy contribution -10.55
Covariance contribution 1.39
Combinations/Pair 1.18
Mean z-score -1.42
Structure conservation index 0.55
SVM decision value 0.31
SVM RNA-class probability 0.684338
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19040173 94 + 23771897
------------AAACUUCAUA------------UCCACUACAUGCCUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGGCUAUAA--AAAAUC
------------..........------------.............(((.(((.(((.((.((((........)))).)))))..))).)))...(((.....))).....--...... ( -19.10)
>DroSec_CAF1 173437 94 + 1
------------AAAAUUUCAA------------UCCACCAUAUGCAUGCUUCACUGUAUCUGGCCAUUCAACCGACCCGAACACUUGACGUAACUGCCAAAACGGCUAUAA--AAAAUC
------------..........------------....(((.(((((........))))).)))................................(((.....))).....--...... (  -9.80)
>DroSim_CAF1 183114 94 + 1
------------AAAAUUGCAA------------UCCACUAUAUGCUUGCUUCACUGUAUCUGGCCAUUCAACCGGCCCGAACACUUGACGUAACUGCCAAAACAGCUAUAA--AAAAUC
------------......(((.------------.........)))((((.(((.(((.((.((((........)))).)))))..))).))))(((......)))......--...... ( -14.80)
>DroEre_CAF1 175556 106 + 1
UUGAUUAAACUGAAACUUCCAC------------UUCACUAUACGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGAAGUAACUGCCAA-ACGGCUUUAAA-AAAAUC
..........((((........------------))))........(((((((..(((.((.((((........)))).)))))...)))))))..(((..-..)))......-...... ( -22.80)
>DroYak_CAF1 196960 119 + 1
AGCAUUUACUAUAAGCAUUUACUAUAUUUACAUAUACACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGACGUAACUGCCAA-ACGGCAUUAAAAAAAAUC
.....((((..(((((((....(((((....)))))......)))))))......(((.((.((((........)))).)))))......)))).((((..-..))))............ ( -24.20)
>DroAna_CAF1 170350 75 + 1
------------AGAAUU--AUU-----------CUAAUUACAAGCUUGUUUCACUGAAACUGGGCAUUAAA------------CUUGACGCAACUACCAAACGGGCUUUAA--------
------------......--...-----------........((((((((((..((......))((.(((..------------..))).)).......))))))))))...-------- (  -9.80)
>consensus
____________AAAAUUCCAA____________UCCACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGGCUAUAA__AAAAUC
...............................................(((.((..(((.((.((((........)))).)))))...)).)))...(((.....)))............. ( -9.16 = -10.55 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:06 2006