Locus 7

Sequence ID 3L_DroMel_CAF1
Location 31,818 – 31,931
Length 113
Max. P 0.709077
window9

overview

Window 9

Location 31,818 – 31,931
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -24.63
Consensus MFE -19.91
Energy contribution -20.03
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -2.43
Structure conservation index 0.81
SVM decision value 0.37
SVM RNA-class probability 0.709077
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 31818 113 - 23771897
UAUUUAACCUCACCUUCCGACGGAUCAACGUAAGUUACUAACCGUUGGGAUCCUUAAUAAGUUGUCACAGCCACAAAGGUAAACAAAAAUAAAAACAAAACAAGCGGUGUACA
..........(((((((((((((...(((....))).....)))))))))...........((((....(((.....)))..))))...................)))).... ( -22.80)
>DroSec_CAF1 20996 113 - 1
UAUUUAACCUCACCUUCCGACGGAUCAAAGUAAGUUACUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACUCAAAUAAAAACAAAACAAGUGAGGUAAA
......(((((((.(((((((((.....((((...))))..)))))))))..(((.(((.((((...))))......))).)))...................)))))))... ( -26.10)
>DroSim_CAF1 22628 113 - 1
UAUUUAAUCUCACCUUCCGACGGAUCAAAGUAAGUUGCUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACGCAAAUAAAAACAAAACAAGUGAGGUAAA
......(((((((.(((((((((.....(((.....)))..))))))))).((((.(((.((((...))))......))).))))..................)))))))... ( -25.00)
>consensus
UAUUUAACCUCACCUUCCGACGGAUCAAAGUAAGUUACUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACACAAAUAAAAACAAAACAAGUGAGGUAAA
......(((((((.(((((((((.....((((...))))..)))))))))..........((((...))))................................)))))))... (-19.91 = -20.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006