Locus 6999

Sequence ID 3L_DroMel_CAF1
Location 18,904,494 – 18,904,587
Length 93
Max. P 0.740928
window11357

overview

Window 7

Location 18,904,494 – 18,904,587
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 87.46
Mean single sequence MFE -27.42
Consensus MFE -23.04
Energy contribution -24.13
Covariance contribution 1.09
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.84
SVM decision value 0.45
SVM RNA-class probability 0.740928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18904494 93 + 23771897
UUUUGGACCCCGUUUCUCACCCCGCCCACAUGAGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCG
..........((((.................((((((((....))))))))((((((((.((((......)))).))))))))..)))).... ( -27.10)
>DroSec_CAF1 39408 92 + 1
UUUUCGGCC-CCUUUCUCAUCCCGCCCACUUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUCCUCAUAUGCCACGACGCUCA
.....(((.-............(((((....)))))......((((.....(((((((.....)))))))))))......))).......... ( -23.50)
>DroSim_CAF1 39994 93 + 1
UUUUCAGCCCCCUUUCUCACCCCGCCCACUUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGGCUUCCUCAUAUGCCACGACGCUCA
......(((....((((.....(((((....)))))......)))).....)))....((((....((((..........))))..))))... ( -23.50)
>DroEre_CAF1 39213 93 + 1
UUUUGGGCCCGGUUUCUCACCCCGCCCACAUGAGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCA
...(((((..(((.....)))..)))))...((((((((....))))))))((((((((.((((......)))).)))))))).......... ( -35.80)
>DroYak_CAF1 38512 93 + 1
UUUUGGGCCCCGUUUCCCACCCCGCUCACAUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGUUCA
...(((((.(((((...(((((.........)))))...))))).......((((((((.((((......)))).)))))))).....))))) ( -29.80)
>DroAna_CAF1 37160 93 + 1
CACUGGGCGCAGAUUCUUGACACGCCUAUAUGGGCGUUUAAUGGCACACUCGGCGUAUGCGUAAUAUGACUGGCUCAUAUGCCACGACGUUGA
.....((((..(....((((.((((((....))))))))))..........((((((((.((..........)).)))))))).)..)))).. ( -24.80)
>consensus
UUUUGGGCCCCGUUUCUCACCCCGCCCACAUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCA
...(((((...............)))))...((((((((....))))))))((((((((.((((......)))).)))))))).......... (-23.04 = -24.13 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:14 2006