Locus 6985

Sequence ID 3L_DroMel_CAF1
Location 18,856,437 – 18,856,536
Length 99
Max. P 0.960380
window11334

overview

Window 4

Location 18,856,437 – 18,856,536
Length 99
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 70.06
Mean single sequence MFE -17.87
Consensus MFE -11.20
Energy contribution -11.90
Covariance contribution 0.70
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.63
SVM decision value 1.51
SVM RNA-class probability 0.960380
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18856437 99 - 23771897
CCCCCCCCCUUCGCGA-UU---CAGCUGGACAUAAA-AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUC---------UCCCCACACCUCCUAAAACUGAGC
............((..-..---..))(((.((....-..(((((((((......)))))))))......)).))).....---------.........(((........))). ( -20.20)
>DroSec_CAF1 21417 87 - 1
C------------CGC-UU---CACCUGGCCAUAAA-AUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGGACGACCUC---------UCCCCCCACCCCCUAAAACUGAAC
.------------...-..---....((.(((....-(((((((((((......)))))))))))....))).)).....---------........................ ( -20.60)
>DroSim_CAF1 21682 86 - 1
C------------CGC-UU---CACCUGGCCAUAAA-AUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUC---------UCC-CCCACUCCUUAAAACUGAAC
.------------...-..---...(.(((......-(((((((((((......))))))))))).....))).).....---------...-.................... ( -20.70)
>DroEre_CAF1 21800 87 - 1
C------------CGC-UU---CUCCUGGCCAUAAA-AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCAACCUA---------UACCCCCAACCCUCUAAACAGAAC
.------------...-..---....(((.((....-..(((((((((......)))))))))......)).))).....---------........................ ( -18.80)
>DroYak_CAF1 22131 87 - 1
C------------CGC-UU---CUCCUCGCCAUAAA-AAGACAGCCUUUUGCCUGCGGCUGUUAUCCUUUGCCCGACAUA---------UCCCCACACCCCUCUAAACUGAAC
.------------...-..---....(((.((....-..(((((((..........)))))))......))..)))....---------........................ ( -10.40)
>DroAna_CAF1 22274 101 - 1
CCCUCAUCUUUCGGGUGCUCGGGUCCUGACCAUAAAAAAGUCAACCGUUUGUCUGCGUCUCUC--------CCCCACCCAUGUUGUCCUUCCCCACCUGCCUCAAAAC----C
............(((((...(((....(((((..(((..(....)..)))...)).)))...)--------)).))))).............................----. ( -16.50)
>consensus
C____________CGC_UU___CACCUGGCCAUAAA_AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUA_________UCCCCACACCCCUCAAAACUGAAC
.......................................(((((((((......))))))))).................................................. (-11.20 = -11.90 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:52 2006