Locus 6984

Sequence ID 3L_DroMel_CAF1
Location 18,855,608 – 18,855,706
Length 98
Max. P 0.685914
window11333

overview

Window 3

Location 18,855,608 – 18,855,706
Length 98
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 90.16
Mean single sequence MFE -27.27
Consensus MFE -23.25
Energy contribution -23.75
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.32
SVM RNA-class probability 0.685914
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18855608 98 + 23771897
UCGCUUUGGG----------GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGAAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAUGCCGGAAAAA
(((((((...----------((....(((((((.((..((((((.................))))).)..))..)))))))...))...)))))))............ ( -27.83)
>DroSec_CAF1 20664 108 + 1
UCGCUUUGGGGGGGGGGGGGGGGGCGUUUAUGUAGGCGCGGGGCGAAAACUGAAAGGAAAAGCCCUAAAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA
..((((.((..............((((((....))))))(((((.....((....))....)))))....))))))........(((.....((....)))))..... ( -28.20)
>DroSim_CAF1 20920 99 + 1
UCGCUUUGGGG---------GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA
(((((((...(---------(.....(((((((.((..((((((.....(.....).....))))).)..))..)))))))...))...)))))))............ ( -27.70)
>DroYak_CAF1 21490 97 + 1
UCGCUUUGGG----------GGGGCGUAUGUGUAGGCGCGGGGCGAAAAGAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAACCGAAGGCCGGAA-AA
..(((((.((----------.((((((........))))(((((.................)))))....)).....(((....))).....)).))))).....-.. ( -25.33)
>consensus
UCGCUUUGGG__________GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA
..((((.((..............((((((....))))))(((((.................)))))....))))))........(((.....((....)))))..... (-23.25 = -23.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:51 2006