Locus 6982

Sequence ID 3L_DroMel_CAF1
Location 18,849,856 – 18,849,947
Length 91
Max. P 0.999977
window11326 window11327

overview

Window 6

Location 18,849,856 – 18,849,947
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 97.10
Mean single sequence MFE -15.97
Consensus MFE -15.05
Energy contribution -15.05
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.94
SVM decision value 2.72
SVM RNA-class probability 0.996627
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18849856 91 + 23771897
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20)
>DroSec_CAF1 15014 91 + 1
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20)
>DroSim_CAF1 14968 91 + 1
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20)
>DroEre_CAF1 15412 91 + 1
UGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CAUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -15.90)
>DroYak_CAF1 15782 91 + 1
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUAUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)..(((...-...))).........--.................))))))........... ( -15.60)
>DroAna_CAF1 16539 93 + 1
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUUUUUUCGCUCUUUAUUUUUCG-GUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)(.(((.......))).)...........-..............))))))........... ( -15.70)
>consensus
CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU_UUUCGCUCUUUAUUU__CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA
.((((((......(.(((((((...))))))).)..(((.......)))............................))))))........... (-15.05 = -15.05 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 7

Location 18,849,856 – 18,849,947
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 97.10
Mean single sequence MFE -14.02
Consensus MFE -13.60
Energy contribution -13.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.97
Structure conservation index 0.97
SVM decision value 5.18
SVM RNA-class probability 0.999977
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18849856 91 - 23771897
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10)
>DroSec_CAF1 15014 91 - 1
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10)
>DroSim_CAF1 14968 91 - 1
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10)
>DroEre_CAF1 15412 91 - 1
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAAUG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCA
...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10)
>DroYak_CAF1 15782 91 - 1
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAUAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10)
>DroAna_CAF1 16539 93 - 1
UAUAAAUAAUAGCUCGUGUAUACUAAACAAC-CGAAAAAUAAAGAGCGAAAAAAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((............-.............(((.......)))....(((((((...)))))))......)))).))). ( -13.60)
>consensus
UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG__AAAUAAAGAGCGAAA_AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG
...........(((.((((..........................(((.......)))....(((((((...)))))))......)))).))). (-13.60 = -13.60 +  -0.00)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:45 2006