Locus 6980

Sequence ID 3L_DroMel_CAF1
Location 18,838,394 – 18,838,507
Length 113
Max. P 0.526826
window11324

overview

Window 4

Location 18,838,394 – 18,838,507
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -24.33
Consensus MFE -18.26
Energy contribution -18.04
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.526826
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18838394 113 - 23771897
GAUUCGAUUCACAUUGAGGAGAAUAUAAAAGCUCUUUAAUGCGGGUUCUCCAUGACUUAUAAACACAAACCAUAUUCGUUGAGAACCGUGUCCAACUUGGUCACCCCCGAAAC
..((((...(.((((((((((..........)))))))))).)(((((((.((((..(((...........))).)))).)))))))(((.((.....)).)))...)))).. ( -30.90)
>DroEre_CAF1 3668 113 - 1
AAUUGGAUUCACAUUAAGUAAAAUAAAAAAGCUUUUUAAUGCGGGUUCUUCAUGACUUAUUUAAACAAACCAUAUUCAUUGAGAACCGUGUCCAACUUGGUCACUCCCGAAAC
..((((...(.(((((((................))))))).)(((((((.((((..(((...........))).)))).)))))))(((.((.....)).)))..))))... ( -22.69)
>DroYak_CAF1 3736 113 - 1
AAUUAAAUUGACAUUAAGUAGAAUAAAGAAGCUCUUUAAUGCGGGUUCUCCAUGUCUUAGUUACACAAACCAUAUUCAUUAAGAACCGUGUCCAACUUGGUCACCCCCGAAAC
.........(((((...(((...(((((.....))))).))).((((((..(((.....(((.....)))......)))..)))))))))))....((((......))))... ( -19.40)
>consensus
AAUUAGAUUCACAUUAAGUAGAAUAAAAAAGCUCUUUAAUGCGGGUUCUCCAUGACUUAUUUACACAAACCAUAUUCAUUGAGAACCGUGUCCAACUUGGUCACCCCCGAAAC
...........(((((((................)))))))(((((((((.(((......................))).)))))))(((.((.....)).)))...)).... (-18.26 = -18.04 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:43 2006