Locus 6972

Sequence ID 3L_DroMel_CAF1
Location 18,819,824 – 18,819,914
Length 90
Max. P 0.794040
window11306

overview

Window 6

Location 18,819,824 – 18,819,914
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 90.11
Mean single sequence MFE -27.00
Consensus MFE -22.55
Energy contribution -23.33
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.32
Structure conservation index 0.84
SVM decision value 0.60
SVM RNA-class probability 0.794040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18819824 90 - 23771897
UUUUCAAUAUAUGUAUGUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUGGUGGUGGCGGUGGUGGUAUCUGCAACUU
...............(((((.(((.(((((((..((((..((((..((((...))))..)))))))))))))))...))).))))).... ( -29.10)
>DroSec_CAF1 27356 80 - 1
UUUUGAAUAUAU----GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUG---GU---GGUGGUGGUAUCUACAACUU
...........(----((((....((((((((..((((..((((..((((...))))..)))---))---)))))))))))))))).... ( -24.30)
>DroSim_CAF1 27993 83 - 1
UUUUGAAUAUAU----GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCAGUGGUGGU---GGUGGUGGUAUCUGCAACUU
...........(----((((....((((((((..((((..((((....((((.....)))).)))))---)))))))))))))))).... ( -27.60)
>consensus
UUUUGAAUAUAU____GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUGGUGGU___GGUGGUGGUAUCUGCAACUU
................((((.(((.(((((((..((((..((((..((((...))))..))))))))...)))))))))).))))..... (-22.55 = -23.33 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:27 2006