Locus 6961

Sequence ID 3L_DroMel_CAF1
Location 18,801,982 – 18,802,078
Length 96
Max. P 0.525939
window11286 window11287

overview

Window 6

Location 18,801,982 – 18,802,078
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -13.57
Consensus MFE -12.13
Energy contribution -12.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.89
SVM decision value -0.05
SVM RNA-class probability 0.509871
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18801982 96 + 23771897
AAGAAAAACCAGUCCAUUAAAAAUAGAAAUCCAGUUGGCAAUUUGGUAGCCAUAAAUAAAUAAACAUAGCUGUAGGCAAAACAAAGUGAACUGCAA
.........((((.((((............((((........))))..((((((..((........))..))).))).......)))).))))... ( -12.10)
>DroSec_CAF1 6310 96 + 1
AAGAAAAACCAGUCCAUUAAAAAAAGAAAUACAGUUGGCAAUUUGCUAGCCAUAAUUAAAUAAACAUAGCUAUAGGCAAAACAAAGUGAACUGCAA
.........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... ( -14.30)
>DroSim_CAF1 6298 96 + 1
AAGAAAAACCAGUCCAUUAAAAAAAGAAAUCCAGUUGGCAAUUUGCUAGCCAUAAAUAAAUAAACAUAGCUAUUGGCAAAACAAAGUGAACUGCAA
.........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... ( -14.30)
>consensus
AAGAAAAACCAGUCCAUUAAAAAAAGAAAUCCAGUUGGCAAUUUGCUAGCCAUAAAUAAAUAAACAUAGCUAUAGGCAAAACAAAGUGAACUGCAA
.........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... (-12.13 = -12.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 18,801,982 – 18,802,078
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -17.70
Consensus MFE -15.37
Energy contribution -16.37
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.87
SVM decision value -0.01
SVM RNA-class probability 0.525939
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18801982 96 - 23771897
UUGCAGUUCACUUUGUUUUGCCUACAGCUAUGUUUAUUUAUUUAUGGCUACCAAAUUGCCAACUGGAUUUCUAUUUUUAAUGGACUGGUUUUUCUU
...(((((((...............(((((((..........))))))).(((..........)))..............)))))))......... ( -15.30)
>DroSec_CAF1 6310 96 - 1
UUGCAGUUCACUUUGUUUUGCCUAUAGCUAUGUUUAUUUAAUUAUGGCUAGCAAAUUGCCAACUGUAUUUCUUUUUUUAAUGGACUGGUUUUUCUU
...(((((((......(((((...((((((((..........))))))))))))).(((.....))).............)))))))......... ( -18.00)
>DroSim_CAF1 6298 96 - 1
UUGCAGUUCACUUUGUUUUGCCAAUAGCUAUGUUUAUUUAUUUAUGGCUAGCAAAUUGCCAACUGGAUUUCUUUUUUUAAUGGACUGGUUUUUCUU
...(((((((......(((((...((((((((..........)))))))))))))...((....))..............)))))))......... ( -19.80)
>consensus
UUGCAGUUCACUUUGUUUUGCCUAUAGCUAUGUUUAUUUAUUUAUGGCUAGCAAAUUGCCAACUGGAUUUCUUUUUUUAAUGGACUGGUUUUUCUU
...(((((((......(((((...((((((((..........)))))))))))))...((....))..............)))))))......... (-15.37 = -16.37 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:09 2006