| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,798,622 – 18,798,721 |
| Length | 99 |
| Max. P | 0.954877 |
| Location | 18,798,622 – 18,798,721 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -16.81 |
| Consensus MFE | -11.40 |
| Energy contribution | -12.90 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18798622 99 - 23771897 CAAAAUAACAACAGUCGAAAUAAUAACAUCGGCAAA-AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGGCAACUUGUUAAGU .....((((((..(((((..........)))))...-.............((((......(.(((((.....))))).)..-...))))...))))))... ( -20.00) >DroSec_CAF1 4047 97 - 1 CAAAAUUACAACAGUCGAAAU---AAGAUCGGCAAAAAAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGACAACUUGUUAAGU .......((((..((((....---....(((((.................))))).....(.(((((.....))))).)..-...))))...))))..... ( -17.13) >DroSim_CAF1 4060 99 - 1 CAAAAUAACAACAGUCGAAAUAAUAAGAUCGGCAAA-AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGGCAACUUGUUAAGU .....((((((..(((((..........)))))...-.............((((......(.(((((.....))))).)..-...))))...))))))... ( -20.00) >DroAna_CAF1 3278 86 - 1 CAA----ACAACAGUCAA-----------CGGCGCUGAAAUAAAUAACAAGCCAAGAUAAGCUCAAUAAAGUGAUACACAAAAGGCGGCAACUUGCUAACU ...----....((((...-----------....)))).............(((..((.....))......(((...)))....)))(((.....))).... ( -10.10) >consensus CAAAAUAACAACAGUCGAAAU___AAGAUCGGCAAA_AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA_AGGCGGCAACUUGUUAAGU .............(((((..........)))))...........(((((((((.....(((((........))))).......)))(....)))))))... (-11.40 = -12.90 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:07 2006