Locus 6958

Sequence ID 3L_DroMel_CAF1
Location 18,794,636 – 18,794,756
Length 120
Max. P 0.555442
window11283

overview

Window 3

Location 18,794,636 – 18,794,756
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -40.59
Consensus MFE -24.81
Energy contribution -24.37
Covariance contribution -0.44
Combinations/Pair 1.23
Mean z-score -1.64
Structure conservation index 0.61
SVM decision value 0.04
SVM RNA-class probability 0.555442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18794636 120 - 23771897
UCCAUCCUCUGUACCUGAUCCUGCCCGCUGGCUUGGCCUGCAGUAUGGCCUUCCACCUGCCGGUUAGUACUCCGCCCAACGCUUUGGUUGCUGGCUAUGCCAACAUUAGGACGAAGGACA
....((((.(((.((((((..((...((.(((...))).)).((((((((..(.(((.(((((........)))......))...))).)..))))))))))..))))))))).)))).. ( -37.80)
>DroVir_CAF1 369 120 - 1
UCCAUCCACUGUACCUGGUCUUCCCAGCAGGUCUCGCCUGCAGCAUGGCCUUCCAUUUGCCGGUGAGCACGCCGCCAAAUGCCCUGGUUGCUGGCUAUGCGCACAUUCGCAGCAAGGACA
....(((.((((...(((.....)))(((((.....))))).((((((((...((((((.(((((....))))).))))))(....).....))))))))........))))...))).. ( -41.60)
>DroGri_CAF1 357 120 - 1
UAAAUCCGCUGUACUUAGUUUUUCCUGCAGGUCUGGCCUGCAGUAUGGCCUUCCACUUGCCAGUGAGCACGCCGCCAAACGCUUUGGUCGCUGGAUAUGCCCACAUUCGCAGCAAGGACA
....((((((((............(((((((.....)))))))...(((..((((..(((......))).((.(((((.....))))).))))))...))).......)))))..))).. ( -38.90)
>DroWil_CAF1 203 120 - 1
UUCAUCCGUUGUAUUUGAUAUUACCCGCUGGCCUGGCCUGCAGUAUGGCCUUCCAUCUGCCUGUGAGCACACCGCCCAAUGCUUUGGUUGCUGGCUAUGCCAAUAUUAGAACAAAGGAUA
...((((.((((.((((((((.......((((.(((((.((((.((((....)))))))).....((((.(((((.....))...)))))))))))).)))))))))))))))).)))). ( -39.31)
>DroMoj_CAF1 369 120 - 1
UACAUCCUCUGUACCUGGUGCUUCCAGCAGGCCUCGCUUGCAGCAUGGCCUUCCAUUUGCCGGUGAGCACGCCACCAAAUGCUUUGGUUGCUGGCUAUGCGCAUAUUCGCAGCAAGGAUA
...(((((((((.....((((..(((((((((((((((.((((.((((....)))))))).))))))...)))(((((.....)))))))))))....))))......))))..))))). ( -46.90)
>DroAna_CAF1 144 120 - 1
UUCAUCCACUUUACCUGAUCCUGCCCGCCGGUUUGGCCUGCAGCAUGGCCUUCCACCUGCCGGUGAGCACUCCGCCGAACGCUCUGGUCGCCGGAUAUGCCAACAUCAGGACGAAGGACA
........((((.((((((..(((.(((((((..((((........))))........))))))).))).((((.(((.(......)))).)))).........))))))..)))).... ( -39.00)
>consensus
UACAUCCACUGUACCUGAUCCUGCCCGCAGGCCUGGCCUGCAGCAUGGCCUUCCACCUGCCGGUGAGCACGCCGCCAAACGCUUUGGUUGCUGGCUAUGCCAACAUUAGCACCAAGGACA
....(((...................((.(((...))).)).((((((((..(.(((.((.((((.......))))....))...))).)..))))))))...............))).. (-24.81 = -24.37 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006