| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,768,911 – 18,769,016 |
| Length | 105 |
| Max. P | 0.558493 |
| Location | 18,768,911 – 18,769,016 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -13.39 |
| Energy contribution | -12.95 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18768911 105 + 23771897 CUUUACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGGAAGAGAUU-----AAUGCAUGGUUUAGU---------- .........(((((.(((....(((....(.(((((((((((...))))))))))).)..........(((.........)))...))).-----...))).)))))...---------- ( -21.40) >DroPse_CAF1 92540 120 + 1 CUCUACGUAGAGCUCGGCUCUUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCGUAUUCCUUAGCAUCUGAAAGAGAUUUCAGAAAGAUAGAGCAGAUUAUUAGCAUGU ((((....)))).((.(((((.(((....(.(((((((((((...))))))))))).)...................(((((((....)))))))..)))))))).))............ ( -28.60) >DroGri_CAF1 57813 105 + 1 CUCUAAGUUGAGCUCUGCUCAUAUCACAUGCUGUCUUCGGUACACUAUCGAAUAUAUCAAAACCGUAUUCCUUUUCAUCUGUGAACG---AAAGAAACAUU--UUUUCUU---------- ........(((((...)))))..((((((((((....))))).......((((((.........)))))).........)))))..(---(((((.....)--)))))..---------- ( -17.20) >DroWil_CAF1 77084 103 + 1 CUCUACGUGGAGCUCUGCUCAUAUCACAAGAUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGUAAACGAAA-----AACA--ACGAAGGAU---------- ......(((((((...))))....)))..(((((((((((((...)))))))))))))..........(((((.((....))...((...-----....--.))))))).---------- ( -22.50) >DroYak_CAF1 52914 105 + 1 CUCUACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGUAAGAGAUA-----AAUAUAUAGUAAAGU---------- ((.(((...((((...)))).((((....(.(((((((((((...))))))))))).)............((((.(....))))).))))-----........))).)).---------- ( -18.60) >DroAna_CAF1 51672 102 + 1 CCCUACGUAGAGCUCUGCUCAUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGAAAGAAAUA-----A---CCUUGUUUAGU---------- .........((((...)))).....(((((.(((((((((((...))))))))))).........((((.(((.........))).))))-----.---.))))).....---------- ( -16.00) >consensus CUCUACGUAGAGCUCUGCUCAUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGUAAGAGAUA_____AACAUAUAGUAUAGU__________ .........((((...)))).........(.(((((((((((...))))))))))).).............................................................. (-13.39 = -12.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:59 2006