Locus 694

Sequence ID 3L_DroMel_CAF1
Location 2,082,791 – 2,082,911
Length 120
Max. P 0.649080
window1061

overview

Window 1

Location 2,082,791 – 2,082,911
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -46.20
Consensus MFE -33.19
Energy contribution -32.95
Covariance contribution -0.24
Combinations/Pair 1.34
Mean z-score -2.07
Structure conservation index 0.72
SVM decision value 0.24
SVM RNA-class probability 0.649080
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2082791 120 - 23771897
ACAUAUUCGCAAGGAGGAUGAGGGCGUGUACAUGUGCCGCGCCGUCAAUCCACUGGGUGAGGCAGUAACCACCGCCUCUAUGCGCGUGGUAUCUGAGGCCAGCAUCCAAAUGGAUACUCA
.......(....)(((..(((.((((((((....)).)))))).)))(((((.((((((.(((..((((((((((......))).)))))...))..)))..))))))..))))).))). ( -47.20)
>DroVir_CAF1 160533 120 - 1
GCACAUCCGUAAGGAGGACGAGGGCGUUUACAUGUGCCGCGCCAUCAAUCCGCUGGGUGAGGCUGUCACCACCGCUUCUAUGCGCGUGGUUACUGAGGCCAGCAUCCAAAUGGAUACUCA
(..(.(((....))))..)((((((((...........)))))....(((((.((((((.((((((.((((((((......))).))))).))...))))..))))))..))))).))). ( -46.10)
>DroGri_CAF1 135130 120 - 1
GCACAUCCGCAAAGAGGAUGAGGGCGUCUACAUGUGCCGCGCUGUCAAUCCACUUGGCGAGGCAGUCACCACCGCCUCAAUGCGUGUGGUGAGCGAGGCUAGCAUCUUAAUGGACACCCA
...(((((.......))))).(((.(((((.(((((((.(((((((...((....))...)))).((((((((((......))).)))))))))).)))..)))).....))))).))). ( -49.30)
>DroWil_CAF1 179311 120 - 1
CCAUAUCCGAAAGGAAGAUGAGGGAGUGUACAUGUGCCGUGCUGUCAAUCCUUUGGGUGAAGCUGUCACAACAGCUUCGAUGCGCGUCGUAUCUGAAGCUAGUAUUCAGAUGGACACACA
.(((.(((....)))..))).....((((.........((((.(((.((((...))))((((((((....)))))))))))))))(((.((((((((.......))))))))))))))). ( -43.80)
>DroMoj_CAF1 138961 120 - 1
GCACAUCCGCAAGGAGGAUGAGGGCGUCUACAUGUGCCGCGCUGUCAAUCCACUUGGCGAGGCCGUCACUACCGCCUCUAUGCGUGUGGUUACCGAGGCCACCAUCCAAAUGGAUACCCA
.....(((....)))(((((..(((.((.......(((((((.(((((.....)))))(((((.((....)).))))).....)))))))....)).)))..)))))...(((....))) ( -47.60)
>DroAna_CAF1 141273 120 - 1
GCACAUCCGCAAGGAGGACGAGGGCGUUUACAUGUGCCGCGCCGUCAAUCCUUUGGGCGAGGCCGUAACCACAGCCUCUAUGCGCGUGGUUUCAGAAGCCAGCAUCCAAAUGGACACCCA
.....(((....)))((..((.(((((...........))))).))..(((((((((.(((((.((....)).))))).....((.(((((.....))))))).)))))).)))...)). ( -43.20)
>consensus
GCACAUCCGCAAGGAGGAUGAGGGCGUCUACAUGUGCCGCGCCGUCAAUCCACUGGGCGAGGCAGUCACCACCGCCUCUAUGCGCGUGGUUACUGAGGCCAGCAUCCAAAUGGACACCCA
.....(((....)))(((((..(((.((.......(((((((.......((....)).(((((.((....)).))))).....)))))))....)).)))..)))))............. (-33.19 = -32.95 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:42 2006