Locus 6931

Sequence ID 3L_DroMel_CAF1
Location 18,693,477 – 18,693,579
Length 102
Max. P 0.860043
window11237

overview

Window 7

Location 18,693,477 – 18,693,579
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 83.81
Mean single sequence MFE -23.02
Consensus MFE -16.16
Energy contribution -16.88
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.70
SVM decision value 0.82
SVM RNA-class probability 0.860043
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18693477 102 + 23771897
GCACAUCAGGUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCUCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG
(((.........)))((((((((.........((((((.(.(((((....))))).)))).)))..................(((.....))).)))))))) ( -19.90)
>DroSec_CAF1 22832 95 + 1
------CACAUUUGCCCGUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCU-UUACGCUAACGCUUUCUGCGGGAAAAUGG
------..(((((.(((((......................(((((....))))).((((.((......)).-))))((....)).....))))).))))). ( -25.70)
>DroSim_CAF1 22869 96 + 1
------CACAUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG
------.........((((((((.........((((((.(.(((((....))))).)))).)))..................(((.....))).)))))))) ( -22.80)
>DroEre_CAF1 22871 93 + 1
GCACACCCUGUUUGUCCACUUUCUUU--------CGUUUUCUGG-CUUUUGGCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAACGG
.......((((((.(((.......((--------((((...(((-(.....))))...))))))..................(((.....)))))))))))) ( -23.10)
>DroYak_CAF1 23965 101 + 1
GCACACCAUAUUUGCCCAUUUUCUUUUCAUUUCUCGUGUCCUGG-GUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG
(((.........)))(((((((((.........((((....(((-(.....))))....))))...................(((.....)))))))))))) ( -23.60)
>consensus
GCACA_CACAUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG
...............((((((((..................(((((....)))))...........................(((.....))).)))))))) (-16.16 = -16.88 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:22 2006