| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,690,154 – 18,690,263 |
| Length | 109 |
| Max. P | 0.594179 |
| Location | 18,690,154 – 18,690,263 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.64 |
| Mean single sequence MFE | -17.85 |
| Consensus MFE | -10.21 |
| Energy contribution | -9.93 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18690154 109 - 23771897 AACUUUUUAUAUUUCCUUGGCGUUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAGUGCUA----C----CCCAACCCCACCCCCCUCACA---UUUGUCAU .................(((((((((((((.......)))))))))...........(((.....((((....))))..----.----..)))................---...)))). ( -15.90) >DroSec_CAF1 19492 108 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUUCUCUGCUCUUGAUUCUGUACUUCAGUGCUC----C----CCCAACCCCACCA-CCUCACA---UUUGUCAU .................((((..(((((((.......))))))).............(((.....((((....))))..----.----..)))........-.......---...)))). ( -14.10) >DroAna_CAF1 17398 112 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGUAAAAAUUUUAUUUGCCAAUUUGUUUUGCUCUUGAUG----GCUGCGAUGCCUGGGAU-A--CCAGGCCAUGCCC-UCUUACAGAACUUGACUU ................((((((..(((((.....)))))))))))...((((((.....((.(----((((....((((((...-.--)))))))).))).-))...))))))....... ( -27.90) >DroSim_CAF1 19511 108 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAGUGCUC----C----CCCGACCCCACCA-CCUCACA---UUUGUCAU .................(((((((((((((.......)))))))....))...............((((....))))..----.----.............-.......---...)))). ( -14.40) >DroEre_CAF1 19454 101 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUGUGCUCUUGAUUCUGCACUUCAAUGCUC----C----CCCAUCCCAUC--------CA---UUCGCCCU ..................((((.(((((((.......)))))))..(((..((((..........))))..))).....----.----...........--------..---..)))).. ( -19.50) >DroYak_CAF1 20163 112 - 1 AACUUUUUAUAUUUCCUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCCGCUCUUGAUUCUGUACUUCAAUCCCC----AUCCCUACAUCCCCGCCA-CCUCACA---UUUGUCAU .................(((((.(((((((.......))))))).............((((.........)))).....----.............)))))-.......---........ ( -15.30) >consensus AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAAUGCUC____C____CCCAACCCCACCA_CCUCACA___UUUGUCAU ..................((((.(((((((.......))))))).........((..((((.........)))).)).....................................)))).. (-10.21 = -9.93 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:16 2006