| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,599,869 – 18,599,978 |
| Length | 109 |
| Max. P | 0.614370 |
| Location | 18,599,869 – 18,599,978 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -8.52 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18599869 109 - 23771897 -AGC-GAGAGAAGUGCAAACUAG--AUUUCAAAGAGCAUACCAAAGAAAU-UCUUUGAAAUGCGUUUCGAUUUCAAAUUGAAACCAAUUACGGCCGGAGAAAAGUUGAAAAAUA -.((-((((..(((....)))..--.)))).....((((..(((((....-.)))))..))))((((((((.....))))))))........)).........(((....))). ( -20.20) >DroSec_CAF1 11546 97 - 1 -AGC-GAGAGAAGUGGAAACUAG--AUUUCAA------------AGAAAU-UCUUUGAAAUGCGUUUCGAUUUCAAAUUGAAACCAAUUACGCCAGGAGAAAAGUUGAAAAAUA -.((-(...(((((.(((((...--(((((((------------((....-.)))))))))..))))).))))).(((((....))))).)))..........(((....))). ( -24.70) >DroSim_CAF1 11352 97 - 1 -AGC-GAGAGAAGUGGAAACUAG--AUUUCAA------------AGAAAU-UCUUUGAAAUGCGUUUCGAUUUCAAAUUGAAACCAAUUACGCCAGAAGAAAAGUUGAAAAAUA -.((-(...(((((.(((((...--(((((((------------((....-.)))))))))..))))).))))).(((((....))))).)))..........(((....))). ( -24.70) >DroEre_CAF1 12253 109 - 1 -AGC-GACAGCAGAGGAAACUAG--AUUUCAGAGAACACACCAAAGAAAU-UCUUUGAAAUGCGUUUCGAUUUCAAAUUGAAACCAAUUACGGCAGGAGAAAAGUUGAAAAAUA -..(-(((.((..((....))..--(((((((((((.............)-))))))))))))((((((((.....))))))))...................))))....... ( -23.02) >DroYak_CAF1 12432 97 - 1 -AGC-GAGAGCAGAGAAAACUAG--AUUUC------------AAAGAAAU-UCUUUGAAAUGCGUUUCGAUAUCAAAUUGAAACCAAUUACGGGAGGAGAAAAGUUGAAAAAUA -.((-....))......((((..--(((((------------((((....-.)))))))))(.((((((((.....))))))))).................))))........ ( -20.20) >DroAna_CAF1 10317 109 - 1 GAACUGGGAGCCGAAAUCACAAAGUAUUCCGGGUAACAUUU-AAAGAAAUCUCUUUGAAAUGCGUUUCAAUUUCAAAUUGAAACCAAUUACGGCCAGGAAAAAGUUACAA---- ...((((((..(...........)..))))))(((((.(((-(((((....)))))))).((.((((((((.....)))))))))).................)))))..---- ( -24.30) >consensus _AGC_GAGAGAAGAGGAAACUAG__AUUUCAA__________AAAGAAAU_UCUUUGAAAUGCGUUUCGAUUUCAAAUUGAAACCAAUUACGGCAGGAGAAAAGUUGAAAAAUA ..........................((((............(((((....)))))....((.((((((((.....))))))))))..........)))).............. ( -8.52 = -8.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:23 2006