Locus 6892

Sequence ID 3L_DroMel_CAF1
Location 18,598,602 – 18,598,699
Length 97
Max. P 0.903906
window11173

overview

Window 3

Location 18,598,602 – 18,598,699
Length 97
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 77.58
Mean single sequence MFE -37.66
Consensus MFE -24.31
Energy contribution -25.56
Covariance contribution 1.25
Combinations/Pair 1.09
Mean z-score -2.00
Structure conservation index 0.65
SVM decision value 1.03
SVM RNA-class probability 0.903906
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18598602 97 - 23771897
CAGGUUAACUGAUGAGGAGGGGGGGGGGGGGGGGU--GAGACAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCAUCGACGCCAC
(((.....))).......((.(..(..((((((((--(...(....)....(((((((.............))))))).)))))))))..)..).)).. ( -37.92)
>DroSec_CAF1 10278 85 - 1
CAGGUUAAA--------AGGGGGGGG--U----CUUGGUGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCCUCGACGCCAC
..(((....--------(((((((((--(----(...((.((....)).))(((((((.............)))))))).))))))))))....))).. ( -38.02)
>DroSim_CAF1 10021 90 - 1
CAGGUUAAA--------AGGGGGAGGGGGCUUGCUUAGAGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACC-CCCCGCACCUUCCCCUCGACGCCUC
.((((....--------(((((((((.(((((.....)))))........((.((.(((((.........)))-)))).)))))))))))....)))). ( -41.30)
>DroEre_CAF1 10995 77 - 1
CAGGUUAAA--------UGGGUG--------------GAGCCGAGGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACUUUCCCCGCCGCGCCAC
.........--------...(((--------------(.((.(.((((((((((((((.............))))))))....)))))).).)).)))) ( -33.42)
>consensus
CAGGUUAAA________AGGGGGGGG__G____CU__GAGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCCUCGACGCCAC
..(((............(((((((((..............((....))(.((((((((.............))))))))).)))))))))....))).. (-24.31 = -25.56 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:20 2006